Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF85 and GFF86 are separated by 41 nucleotides GFF86 and GFF87 overlap by 4 nucleotides GFF87 and GFF88 are separated by 7 nucleotides
GFF85 - Transcriptional regulator, LysR family, at 101,576 to 102,475
GFF85
GFF86 - Cell morphology protein, at 102,517 to 103,191
GFF86
GFF87 - no description, at 103,188 to 103,868
GFF87
GFF88 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 103,876 to 105,270
GFF88
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1 at 101.777 kb on + strand, within GFF85 at 101.777 kb on + strand, within GFF85 at 101.777 kb on + strand, within GFF85 at 101.777 kb on + strand, within GFF85 at 101.778 kb on - strand, within GFF85 at 101.778 kb on - strand, within GFF85 at 102.098 kb on + strand, within GFF85 at 102.099 kb on - strand, within GFF85 at 102.444 kb on + strand at 102.444 kb on + strand at 102.482 kb on + strand at 102.483 kb on - strand at 102.483 kb on - strand at 102.589 kb on + strand, within GFF86 at 102.590 kb on - strand, within GFF86 at 102.590 kb on - strand, within GFF86 at 102.590 kb on - strand, within GFF86 at 102.590 kb on - strand, within GFF86 at 102.590 kb on - strand, within GFF86 at 102.670 kb on + strand, within GFF86 at 102.968 kb on - strand, within GFF86 at 102.980 kb on - strand, within GFF86 at 102.980 kb on - strand, within GFF86 at 103.273 kb on - strand, within GFF87 at 103.273 kb on - strand, within GFF87 at 103.405 kb on - strand, within GFF87 at 103.602 kb on + strand, within GFF87 at 103.602 kb on + strand, within GFF87 at 103.603 kb on - strand, within GFF87 at 103.603 kb on - strand, within GFF87 at 103.603 kb on - strand, within GFF87 at 103.934 kb on - strand at 103.934 kb on - strand at 103.934 kb on - strand at 103.993 kb on + strand at 103.993 kb on + strand at 103.994 kb on - strand at 103.994 kb on - strand at 103.994 kb on - strand at 103.994 kb on - strand at 103.994 kb on - strand at 104.138 kb on + strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.150 kb on - strand, within GFF88
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 101,777 + GFF85 0.22 -1.4 101,777 + GFF85 0.22 +1.0 101,777 + GFF85 0.22 -0.0 101,777 + GFF85 0.22 +0.4 101,778 - GFF85 0.22 -1.9 101,778 - GFF85 0.22 -0.2 102,098 + GFF85 0.58 -1.5 102,099 - GFF85 0.58 -0.1 102,444 + +0.8 102,444 + -0.7 102,482 + +0.2 102,483 - +0.0 102,483 - -0.8 102,589 + GFF86 0.11 +1.0 102,590 - GFF86 0.11 +0.1 102,590 - GFF86 0.11 +0.3 102,590 - GFF86 0.11 +0.2 102,590 - GFF86 0.11 -0.5 102,590 - GFF86 0.11 -0.1 102,670 + GFF86 0.23 +0.3 102,968 - GFF86 0.67 -0.1 102,980 - GFF86 0.69 +0.7 102,980 - GFF86 0.69 +0.8 103,273 - GFF87 0.12 -0.0 103,273 - GFF87 0.12 +1.0 103,405 - GFF87 0.32 -0.4 103,602 + GFF87 0.61 -1.3 103,602 + GFF87 0.61 -0.8 103,603 - GFF87 0.61 +0.4 103,603 - GFF87 0.61 +0.0 103,603 - GFF87 0.61 +0.3 103,934 - +1.0 103,934 - +1.4 103,934 - +0.2 103,993 + -0.2 103,993 + -0.5 103,994 - -1.1 103,994 - -1.3 103,994 - -1.5 103,994 - -0.1 103,994 - -0.0 104,138 + GFF88 0.19 +0.8 104,139 - GFF88 0.19 -0.0 104,139 - GFF88 0.19 -0.4 104,139 - GFF88 0.19 +0.5 104,139 - GFF88 0.19 -0.4 104,139 - GFF88 0.19 +1.1 104,139 - GFF88 0.19 -0.4 104,139 - GFF88 0.19 -0.4 104,150 - GFF88 0.20 +0.1
Or see this region's nucleotide sequence