Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7337 and GFF7338 overlap by 8 nucleotides GFF7338 and GFF7339 overlap by 4 nucleotides GFF7339 and GFF7340 are separated by 4 nucleotides
GFF7337 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 6,175 to 7,137
GFF7337
GFF7338 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 7,130 to 7,957
GFF7338
GFF7339 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 7,954 to 8,781
GFF7339
GFF7340 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 8,786 to 9,877
GFF7340
Position (kb) 7
8
9 Strain fitness (log2 ratio) -1
0
1 at 7.239 kb on + strand, within GFF7338 at 7.342 kb on - strand, within GFF7338 at 7.947 kb on - strand at 8.174 kb on + strand, within GFF7339 at 8.175 kb on - strand, within GFF7339 at 8.742 kb on - strand at 8.847 kb on + strand at 8.864 kb on + strand at 8.864 kb on + strand at 8.910 kb on + strand, within GFF7340 at 8.911 kb on - strand, within GFF7340 at 9.322 kb on - strand, within GFF7340 at 9.322 kb on - strand, within GFF7340 at 9.427 kb on - strand, within GFF7340 at 9.427 kb on - strand, within GFF7340 at 9.594 kb on + strand, within GFF7340 at 9.625 kb on - strand, within GFF7340 at 9.625 kb on - strand, within GFF7340
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 7,239 + GFF7338 0.13 -0.1 7,342 - GFF7338 0.26 -1.1 7,947 - -0.9 8,174 + GFF7339 0.27 -0.3 8,175 - GFF7339 0.27 +1.0 8,742 - -0.7 8,847 + -0.5 8,864 + -0.4 8,864 + +0.1 8,910 + GFF7340 0.11 +0.2 8,911 - GFF7340 0.11 -0.0 9,322 - GFF7340 0.49 -0.5 9,322 - GFF7340 0.49 -0.3 9,427 - GFF7340 0.59 -0.5 9,427 - GFF7340 0.59 -0.5 9,594 + GFF7340 0.74 -0.7 9,625 - GFF7340 0.77 -0.5 9,625 - GFF7340 0.77 -1.2
Or see this region's nucleotide sequence