Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7189 and GFF7190 are separated by 57 nucleotides GFF7190 and GFF7191 overlap by 4 nucleotides
GFF7189 - dioxygenase, TauD/TfdA family, at 6,110 to 7,027
GFF7189
GFF7190 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 7,085 to 8,455
GFF7190
GFF7191 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 8,452 to 9,633
GFF7191
Position (kb) 7
8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 6.350 kb on + strand, within GFF7189 at 6.651 kb on - strand, within GFF7189 at 6.836 kb on + strand, within GFF7189 at 6.893 kb on + strand, within GFF7189 at 6.893 kb on + strand, within GFF7189 at 6.894 kb on - strand, within GFF7189 at 6.895 kb on + strand, within GFF7189 at 6.895 kb on + strand, within GFF7189 at 7.455 kb on + strand, within GFF7190 at 7.455 kb on + strand, within GFF7190 at 7.456 kb on - strand, within GFF7190 at 7.595 kb on + strand, within GFF7190 at 7.596 kb on - strand, within GFF7190 at 7.658 kb on + strand, within GFF7190 at 7.658 kb on + strand, within GFF7190 at 7.659 kb on - strand, within GFF7190 at 7.659 kb on - strand, within GFF7190 at 7.703 kb on + strand, within GFF7190 at 7.704 kb on - strand, within GFF7190 at 7.704 kb on - strand, within GFF7190 at 7.976 kb on + strand, within GFF7190 at 8.905 kb on + strand, within GFF7191 at 8.905 kb on + strand, within GFF7191 at 8.905 kb on + strand, within GFF7191 at 8.906 kb on - strand, within GFF7191 at 8.981 kb on - strand, within GFF7191 at 8.981 kb on - strand, within GFF7191 at 8.981 kb on - strand, within GFF7191
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 6,350 + GFF7189 0.26 -0.9 6,651 - GFF7189 0.59 -0.2 6,836 + GFF7189 0.79 -0.5 6,893 + GFF7189 0.85 +0.4 6,893 + GFF7189 0.85 -0.7 6,894 - GFF7189 0.85 -1.8 6,895 + GFF7189 0.86 -3.0 6,895 + GFF7189 0.86 -0.4 7,455 + GFF7190 0.27 -0.1 7,455 + GFF7190 0.27 -1.0 7,456 - GFF7190 0.27 +0.0 7,595 + GFF7190 0.37 -1.4 7,596 - GFF7190 0.37 -0.5 7,658 + GFF7190 0.42 -1.3 7,658 + GFF7190 0.42 -0.4 7,659 - GFF7190 0.42 +0.7 7,659 - GFF7190 0.42 -0.0 7,703 + GFF7190 0.45 -0.9 7,704 - GFF7190 0.45 -0.3 7,704 - GFF7190 0.45 -0.8 7,976 + GFF7190 0.65 -1.0 8,905 + GFF7191 0.38 -0.4 8,905 + GFF7191 0.38 +0.1 8,905 + GFF7191 0.38 +0.5 8,906 - GFF7191 0.38 -0.9 8,981 - GFF7191 0.45 -0.0 8,981 - GFF7191 0.45 +0.3 8,981 - GFF7191 0.45 -0.2
Or see this region's nucleotide sequence