Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7171 and GFF7172 overlap by 14 nucleotides GFF7172 and GFF7173 are separated by 132 nucleotides GFF7173 and GFF7174 are separated by 81 nucleotides
GFF7171 - Transcriptional regulator DmlR, LysR family, at 35,153 to 36,091
GFF7171
GFF7172 - Manganese transport protein MntH, at 36,078 to 37,403
GFF7172
GFF7173 - Protein ygiN, at 37,536 to 37,844
GFF7173
GFF7174 - no description, at 37,926 to 38,465
GFF7174
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 35.123 kb on + strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.672 kb on + strand, within GFF7171 at 35.672 kb on + strand, within GFF7171 at 35.673 kb on - strand, within GFF7171 at 35.673 kb on - strand, within GFF7171 at 35.756 kb on + strand, within GFF7171 at 35.757 kb on - strand, within GFF7171 at 35.757 kb on - strand, within GFF7171 at 35.889 kb on + strand, within GFF7171 at 35.890 kb on - strand, within GFF7171 at 35.890 kb on - strand, within GFF7171 at 35.890 kb on - strand, within GFF7171 at 35.915 kb on + strand, within GFF7171 at 35.915 kb on + strand, within GFF7171 at 35.915 kb on + strand, within GFF7171 at 35.916 kb on - strand, within GFF7171 at 35.954 kb on + strand, within GFF7171 at 35.954 kb on + strand, within GFF7171 at 35.955 kb on - strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 36.709 kb on + strand, within GFF7172 at 36.709 kb on + strand, within GFF7172 at 36.709 kb on + strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.710 kb on - strand, within GFF7172 at 36.758 kb on - strand, within GFF7172 at 37.090 kb on + strand, within GFF7172 at 37.091 kb on - strand, within GFF7172 at 37.261 kb on + strand, within GFF7172 at 37.262 kb on - strand, within GFF7172 at 37.262 kb on - strand, within GFF7172 at 37.415 kb on + strand at 37.473 kb on + strand at 37.473 kb on + strand at 37.473 kb on + strand at 37.474 kb on - strand at 37.474 kb on - strand at 37.474 kb on - strand at 37.474 kb on - strand at 38.193 kb on + strand, within GFF7174 at 38.334 kb on + strand, within GFF7174 at 38.334 kb on + strand, within GFF7174 at 38.335 kb on - strand, within GFF7174 at 38.392 kb on - strand, within GFF7174
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,123 + -0.2 35,124 - +0.2 35,124 - -1.5 35,124 - +0.4 35,124 - +0.3 35,354 + GFF7171 0.21 -0.2 35,354 + GFF7171 0.21 -0.9 35,354 + GFF7171 0.21 -0.6 35,354 + GFF7171 0.21 +0.4 35,354 + GFF7171 0.21 -1.0 35,355 - GFF7171 0.22 -1.5 35,355 - GFF7171 0.22 +0.2 35,355 - GFF7171 0.22 +0.3 35,355 - GFF7171 0.22 +0.2 35,355 - GFF7171 0.22 +0.3 35,355 - GFF7171 0.22 -0.0 35,355 - GFF7171 0.22 +1.9 35,672 + GFF7171 0.55 +0.9 35,672 + GFF7171 0.55 -1.0 35,673 - GFF7171 0.55 -0.2 35,673 - GFF7171 0.55 -0.5 35,756 + GFF7171 0.64 +0.3 35,757 - GFF7171 0.64 +0.6 35,757 - GFF7171 0.64 -0.0 35,889 + GFF7171 0.78 +0.7 35,890 - GFF7171 0.78 -0.2 35,890 - GFF7171 0.78 -1.0 35,890 - GFF7171 0.78 -0.4 35,915 + GFF7171 0.81 -0.9 35,915 + GFF7171 0.81 +0.3 35,915 + GFF7171 0.81 -0.0 35,916 - GFF7171 0.81 -0.4 35,954 + GFF7171 0.85 +0.7 35,954 + GFF7171 0.85 -0.9 35,955 - GFF7171 0.85 +1.4 35,978 + GFF7171 0.88 +0.3 35,978 + GFF7171 0.88 -0.5 35,978 + GFF7171 0.88 -0.9 35,978 + GFF7171 0.88 +0.2 35,978 + GFF7171 0.88 -1.1 35,978 + GFF7171 0.88 +0.3 35,978 + GFF7171 0.88 +0.7 35,978 + GFF7171 0.88 -0.5 35,978 + GFF7171 0.88 +0.0 35,978 + GFF7171 0.88 +0.4 35,978 + GFF7171 0.88 -0.0 35,978 + GFF7171 0.88 +0.6 35,978 + GFF7171 0.88 -0.0 35,979 - GFF7171 0.88 -0.1 35,979 - GFF7171 0.88 +0.2 35,979 - GFF7171 0.88 -0.0 35,979 - GFF7171 0.88 +0.3 35,979 - GFF7171 0.88 +0.2 35,979 - GFF7171 0.88 -0.8 35,979 - GFF7171 0.88 +0.0 35,979 - GFF7171 0.88 +1.3 35,979 - GFF7171 0.88 -0.8 36,709 + GFF7172 0.48 -0.1 36,709 + GFF7172 0.48 +0.6 36,709 + GFF7172 0.48 +2.3 36,710 - GFF7172 0.48 +0.7 36,710 - GFF7172 0.48 -0.0 36,710 - GFF7172 0.48 -0.3 36,710 - GFF7172 0.48 -0.8 36,710 - GFF7172 0.48 +0.3 36,758 - GFF7172 0.51 +0.9 37,090 + GFF7172 0.76 -0.1 37,091 - GFF7172 0.76 -0.0 37,261 + GFF7172 0.89 -0.0 37,262 - GFF7172 0.89 -1.8 37,262 - GFF7172 0.89 +0.1 37,415 + -1.6 37,473 + +1.3 37,473 + +0.3 37,473 + +0.9 37,474 - -0.3 37,474 - +0.4 37,474 - +0.2 37,474 - -0.0 38,193 + GFF7174 0.49 +0.5 38,334 + GFF7174 0.76 +1.1 38,334 + GFF7174 0.76 -0.4 38,335 - GFF7174 0.76 -1.0 38,392 - GFF7174 0.86 +0.5
Or see this region's nucleotide sequence