Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7076 and GFF7077 overlap by 4 nucleotides GFF7077 and GFF7078 are separated by 141 nucleotides GFF7078 and GFF7079 are separated by 11 nucleotides GFF7079 and GFF7080 are separated by 66 nucleotides GFF7080 and GFF7081 are separated by 141 nucleotides
GFF7076 - no description, at 2 to 136
GFF7076
GFF7077 - no description, at 133 to 534
GFF7077
GFF7078 - no description, at 676 to 840
GFF7078
GFF7079 - hypothetical protein, at 852 to 1,181
GFF7079
GFF7080 - no description, at 1,248 to 1,496
GFF7080
GFF7081 - Mobile element protein, at 1,638 to 2,195
GFF7081
Position (kb) 0
1 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 0.110 kb on + strand, within GFF7076 at 0.110 kb on + strand, within GFF7076 at 0.111 kb on - strand, within GFF7076 at 0.354 kb on + strand, within GFF7077 at 0.354 kb on + strand, within GFF7077 at 0.534 kb on + strand at 0.534 kb on + strand at 0.534 kb on + strand at 0.534 kb on + strand at 0.534 kb on + strand at 0.534 kb on + strand at 0.535 kb on - strand at 0.535 kb on - strand at 0.535 kb on - strand at 0.535 kb on - strand at 0.535 kb on - strand at 0.535 kb on - strand at 0.535 kb on - strand at 0.551 kb on + strand at 0.551 kb on + strand at 0.551 kb on + strand at 0.551 kb on + strand at 0.552 kb on - strand at 0.673 kb on + strand at 0.673 kb on + strand at 0.673 kb on + strand at 0.673 kb on + strand at 0.674 kb on - strand at 0.773 kb on - strand, within GFF7078 at 0.773 kb on - strand, within GFF7078 at 0.851 kb on + strand at 0.851 kb on + strand at 0.851 kb on + strand at 0.851 kb on + strand at 0.852 kb on - strand at 0.852 kb on - strand at 0.871 kb on - strand at 0.871 kb on - strand at 0.997 kb on - strand, within GFF7079 at 1.158 kb on + strand at 1.159 kb on - strand at 1.159 kb on - strand at 1.180 kb on - strand at 1.219 kb on + strand at 1.219 kb on + strand at 1.219 kb on + strand at 1.220 kb on - strand at 1.220 kb on - strand at 1.319 kb on + strand, within GFF7080 at 1.355 kb on + strand, within GFF7080 at 1.355 kb on + strand, within GFF7080 at 1.355 kb on + strand, within GFF7080 at 1.356 kb on - strand, within GFF7080 at 1.356 kb on - strand, within GFF7080 at 1.356 kb on - strand, within GFF7080 at 1.356 kb on - strand, within GFF7080 at 1.402 kb on + strand, within GFF7080 at 1.402 kb on + strand, within GFF7080 at 1.402 kb on + strand, within GFF7080 at 1.526 kb on + strand at 1.526 kb on + strand at 1.527 kb on - strand at 1.527 kb on - strand at 1.527 kb on - strand at 1.527 kb on - strand at 1.527 kb on - strand at 1.527 kb on - strand at 1.527 kb on - strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.568 kb on - strand at 1.568 kb on - strand at 1.600 kb on + strand at 1.600 kb on + strand at 1.600 kb on + strand at 1.600 kb on + strand at 1.600 kb on + strand at 1.600 kb on + strand at 1.601 kb on - strand at 1.601 kb on - strand at 1.601 kb on - strand at 1.601 kb on - strand at 1.635 kb on - strand at 1.635 kb on - strand at 1.635 kb on - strand at 1.635 kb on - strand at 1.635 kb on - strand at 1.635 kb on - strand at 1.635 kb on - strand at 1.635 kb on - strand at 1.635 kb on - strand at 1.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 110 + GFF7076 0.80 -0.6 110 + GFF7076 0.80 -1.0 111 - GFF7076 0.81 -2.1 354 + GFF7077 0.55 +0.1 354 + GFF7077 0.55 -0.6 534 + -2.4 534 + +0.2 534 + -0.6 534 + +0.3 534 + -0.4 534 + -0.1 535 - -1.1 535 - -0.6 535 - -0.2 535 - +0.4 535 - -0.4 535 - -0.2 535 - -0.1 551 + +0.0 551 + -0.4 551 + -0.6 551 + +0.4 552 - -1.1 673 + +1.3 673 + -1.3 673 + -0.7 673 + -0.8 674 - -0.6 773 - GFF7078 0.59 -0.4 773 - GFF7078 0.59 +0.5 851 + -0.3 851 + +1.4 851 + -0.7 851 + -0.1 852 - +0.2 852 - -0.7 871 - +0.4 871 - -0.3 997 - GFF7079 0.44 -0.8 1,158 + -0.1 1,159 - -0.1 1,159 - +0.3 1,180 - -0.0 1,219 + +3.6 1,219 + -0.9 1,219 + -0.1 1,220 - +1.2 1,220 - +0.1 1,319 + GFF7080 0.29 +0.4 1,355 + GFF7080 0.43 -1.4 1,355 + GFF7080 0.43 +0.6 1,355 + GFF7080 0.43 -1.1 1,356 - GFF7080 0.43 -0.6 1,356 - GFF7080 0.43 +0.4 1,356 - GFF7080 0.43 -2.1 1,356 - GFF7080 0.43 -0.2 1,402 + GFF7080 0.62 +0.4 1,402 + GFF7080 0.62 -1.1 1,402 + GFF7080 0.62 -0.4 1,526 + +0.2 1,526 + -0.4 1,527 - +0.1 1,527 - -0.7 1,527 - +0.4 1,527 - +0.6 1,527 - -0.6 1,527 - -1.4 1,527 - -0.6 1,567 + +0.4 1,567 + -0.4 1,568 - -0.5 1,568 - +0.5 1,600 + -0.2 1,600 + +0.2 1,600 + -0.6 1,600 + -0.2 1,600 + +0.2 1,600 + +0.8 1,601 - +0.7 1,601 - -0.7 1,601 - +0.9 1,601 - +1.3 1,635 - +0.1 1,635 - +0.7 1,635 - -1.0 1,635 - +0.0 1,635 - -0.8 1,635 - -0.0 1,635 - +0.2 1,635 - -0.5 1,635 - -0.6 1,635 - -0.2
Or see this region's nucleotide sequence