Strain Fitness in Variovorax sp. SCN45 around GFF6956

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6953 and GFF6954 are separated by 183 nucleotidesGFF6954 and GFF6955 are separated by 7 nucleotidesGFF6955 and GFF6956 are separated by 260 nucleotidesGFF6956 and GFF6957 are separated by 2 nucleotides GFF6953 - Universal stress protein UspA and related nucleotide-binding proteins, at 29,511 to 30,335 GFF6953 GFF6954 - no description, at 30,519 to 30,722 GFF6954 GFF6955 - no description, at 30,730 to 30,864 GFF6955 GFF6956 - Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein, at 31,125 to 31,820 GFF6956 GFF6957 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 31,823 to 33,229 GFF6957 Position (kb) 31 32Strain fitness (log2 ratio) -1 0 1at 30.187 kb on + strand, within GFF6953at 30.187 kb on + strand, within GFF6953at 31.637 kb on - strand, within GFF6956at 31.863 kb on + strandat 32.184 kb on + strand, within GFF6957at 32.185 kb on - strand, within GFF6957at 32.341 kb on - strand, within GFF6957at 32.346 kb on + strand, within GFF6957at 32.347 kb on - strand, within GFF6957at 32.466 kb on + strand, within GFF6957at 32.466 kb on + strand, within GFF6957at 32.467 kb on - strand, within GFF6957at 32.473 kb on - strand, within GFF6957at 32.556 kb on + strand, within GFF6957at 32.557 kb on - strand, within GFF6957

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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30,187 + GFF6953 0.82 -0.2
30,187 + GFF6953 0.82 +0.5
31,637 - GFF6956 0.74 -0.0
31,863 + +0.2
32,184 + GFF6957 0.26 -0.5
32,185 - GFF6957 0.26 -0.7
32,341 - GFF6957 0.37 +1.4
32,346 + GFF6957 0.37 -0.4
32,347 - GFF6957 0.37 -1.0
32,466 + GFF6957 0.46 +0.1
32,466 + GFF6957 0.46 -1.5
32,467 - GFF6957 0.46 -0.9
32,473 - GFF6957 0.46 +0.8
32,556 + GFF6957 0.52 -0.2
32,557 - GFF6957 0.52 +0.1

Or see this region's nucleotide sequence