Strain Fitness in Variovorax sp. SCN45 around GFF682

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF681 and GFF682 overlap by 4 nucleotidesGFF682 and GFF683 overlap by 12 nucleotidesGFF683 and GFF684 are separated by 45 nucleotides GFF681 - Hypothetical protein in cluster with At3g50560-like gene family, at 735,698 to 736,537 GFF681 GFF682 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 736,534 to 737,139 GFF682 GFF683 - Transcriptional regulator, LysR family, at 737,128 to 738,048 GFF683 GFF684 - FIG00553873: hypothetical protein, at 738,094 to 739,074 GFF684 Position (kb) 736 737 738Strain fitness (log2 ratio) -1 0 1 2at 735.537 kb on - strandat 735.537 kb on - strandat 735.537 kb on - strandat 735.542 kb on + strandat 735.550 kb on + strandat 735.555 kb on + strandat 735.555 kb on + strandat 735.555 kb on + strandat 735.555 kb on + strandat 735.555 kb on + strandat 735.555 kb on + strandat 735.556 kb on - strandat 735.608 kb on + strandat 735.681 kb on + strandat 735.681 kb on + strandat 735.681 kb on + strandat 735.682 kb on - strandat 735.737 kb on + strandat 735.737 kb on + strandat 735.737 kb on + strandat 735.737 kb on + strandat 735.738 kb on - strandat 735.738 kb on - strandat 735.738 kb on - strandat 735.738 kb on - strandat 735.770 kb on + strandat 735.770 kb on + strandat 735.770 kb on + strandat 735.771 kb on - strandat 735.771 kb on - strandat 735.815 kb on + strand, within GFF681at 735.815 kb on + strand, within GFF681at 735.815 kb on + strand, within GFF681at 735.815 kb on + strand, within GFF681at 735.815 kb on + strand, within GFF681at 735.815 kb on + strand, within GFF681at 735.816 kb on - strand, within GFF681at 735.816 kb on - strand, within GFF681at 735.816 kb on - strand, within GFF681at 735.816 kb on - strand, within GFF681at 735.953 kb on + strand, within GFF681at 735.953 kb on + strand, within GFF681at 735.954 kb on - strand, within GFF681at 736.118 kb on + strand, within GFF681at 736.118 kb on + strand, within GFF681at 736.119 kb on - strand, within GFF681at 736.119 kb on - strand, within GFF681at 736.119 kb on - strand, within GFF681at 736.119 kb on - strand, within GFF681at 736.193 kb on + strand, within GFF681at 736.193 kb on + strand, within GFF681at 736.193 kb on + strand, within GFF681at 736.194 kb on - strand, within GFF681at 736.194 kb on - strand, within GFF681at 736.331 kb on + strand, within GFF681at 736.331 kb on + strand, within GFF681at 736.331 kb on + strand, within GFF681at 736.332 kb on - strand, within GFF681at 736.332 kb on - strand, within GFF681at 736.332 kb on - strand, within GFF681at 736.367 kb on + strand, within GFF681at 736.367 kb on + strand, within GFF681at 736.367 kb on + strand, within GFF681at 736.367 kb on + strand, within GFF681at 736.412 kb on + strand, within GFF681at 736.413 kb on - strand, within GFF681at 736.413 kb on - strand, within GFF681at 736.443 kb on - strand, within GFF681at 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.573 kb on + strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.574 kb on - strandat 736.579 kb on + strandat 736.579 kb on + strandat 736.579 kb on + strandat 736.579 kb on + strandat 736.579 kb on + strandat 736.580 kb on - strandat 736.580 kb on - strandat 736.580 kb on - strandat 736.580 kb on - strandat 736.580 kb on - strandat 736.580 kb on - strandat 736.720 kb on + strand, within GFF682at 736.720 kb on + strand, within GFF682at 736.720 kb on + strand, within GFF682at 736.720 kb on + strand, within GFF682at 736.721 kb on - strand, within GFF682at 736.721 kb on - strand, within GFF682at 736.721 kb on - strand, within GFF682at 736.721 kb on - strand, within GFF682at 736.721 kb on - strand, within GFF682at 736.721 kb on - strand, within GFF682at 736.756 kb on + strand, within GFF682at 736.757 kb on - strand, within GFF682at 736.757 kb on - strand, within GFF682at 737.222 kb on + strand, within GFF683at 737.222 kb on + strand, within GFF683at 737.223 kb on - strand, within GFF683at 737.223 kb on - strand, within GFF683at 737.223 kb on - strand, within GFF683at 737.223 kb on - strand, within GFF683at 737.223 kb on - strand, within GFF683at 737.360 kb on + strand, within GFF683at 737.361 kb on - strand, within GFF683at 737.594 kb on + strand, within GFF683at 737.595 kb on - strand, within GFF683at 737.595 kb on - strand, within GFF683

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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735,537 - +0.2
735,537 - -0.1
735,537 - -0.1
735,542 + +0.1
735,550 + +2.5
735,555 + -1.6
735,555 + -0.2
735,555 + +0.1
735,555 + +0.0
735,555 + -0.2
735,555 + +0.4
735,556 - -0.8
735,608 + +1.1
735,681 + -0.9
735,681 + -0.6
735,681 + -0.5
735,682 - -0.9
735,737 + -0.9
735,737 + -0.1
735,737 + +0.4
735,737 + -0.9
735,738 - -0.8
735,738 - +1.5
735,738 - -0.4
735,738 - +0.2
735,770 + +1.4
735,770 + -0.2
735,770 + -0.5
735,771 - -0.5
735,771 - -1.0
735,815 + GFF681 0.14 +1.4
735,815 + GFF681 0.14 -0.6
735,815 + GFF681 0.14 +0.4
735,815 + GFF681 0.14 +0.2
735,815 + GFF681 0.14 +0.9
735,815 + GFF681 0.14 -0.5
735,816 - GFF681 0.14 +0.2
735,816 - GFF681 0.14 -0.6
735,816 - GFF681 0.14 -0.1
735,816 - GFF681 0.14 -0.1
735,953 + GFF681 0.30 -0.5
735,953 + GFF681 0.30 +0.4
735,954 - GFF681 0.30 -0.5
736,118 + GFF681 0.50 -0.2
736,118 + GFF681 0.50 +0.1
736,119 - GFF681 0.50 -0.5
736,119 - GFF681 0.50 -0.2
736,119 - GFF681 0.50 +1.1
736,119 - GFF681 0.50 -0.6
736,193 + GFF681 0.59 +0.0
736,193 + GFF681 0.59 +0.0
736,193 + GFF681 0.59 +1.5
736,194 - GFF681 0.59 +0.4
736,194 - GFF681 0.59 +0.9
736,331 + GFF681 0.75 -0.9
736,331 + GFF681 0.75 -0.2
736,331 + GFF681 0.75 -1.1
736,332 - GFF681 0.75 -0.6
736,332 - GFF681 0.75 -0.4
736,332 - GFF681 0.75 -0.2
736,367 + GFF681 0.80 -0.1
736,367 + GFF681 0.80 -0.6
736,367 + GFF681 0.80 -0.1
736,367 + GFF681 0.80 -0.2
736,412 + GFF681 0.85 -1.2
736,413 - GFF681 0.85 -0.1
736,413 - GFF681 0.85 -0.1
736,443 - GFF681 0.89 -0.6
736,573 + +0.9
736,573 + -0.8
736,573 + -0.1
736,573 + +0.1
736,573 + -1.1
736,573 + +0.9
736,573 + -0.4
736,573 + -0.3
736,573 + -0.0
736,573 + +0.7
736,573 + +1.1
736,573 + -1.1
736,573 + +0.5
736,573 + +0.1
736,573 + -0.4
736,574 - +0.4
736,574 - +0.1
736,574 - +0.0
736,574 - -0.6
736,574 - -0.7
736,574 - +0.0
736,574 - -1.1
736,574 - +1.4
736,574 - +1.1
736,574 - -0.5
736,574 - +1.0
736,574 - -0.5
736,574 - -1.1
736,579 + +0.2
736,579 + +0.2
736,579 + +0.7
736,579 + -0.3
736,579 + -0.4
736,580 - -0.7
736,580 - -0.1
736,580 - +0.4
736,580 - +0.9
736,580 - +0.7
736,580 - +0.1
736,720 + GFF682 0.31 -0.3
736,720 + GFF682 0.31 -0.2
736,720 + GFF682 0.31 +0.6
736,720 + GFF682 0.31 +1.0
736,721 - GFF682 0.31 +0.9
736,721 - GFF682 0.31 -0.8
736,721 - GFF682 0.31 -0.8
736,721 - GFF682 0.31 +0.4
736,721 - GFF682 0.31 +0.4
736,721 - GFF682 0.31 +0.1
736,756 + GFF682 0.37 -0.7
736,757 - GFF682 0.37 +1.9
736,757 - GFF682 0.37 -1.4
737,222 + GFF683 0.10 +0.1
737,222 + GFF683 0.10 +0.5
737,223 - GFF683 0.10 -0.1
737,223 - GFF683 0.10 +0.3
737,223 - GFF683 0.10 +0.4
737,223 - GFF683 0.10 +0.2
737,223 - GFF683 0.10 +0.7
737,360 + GFF683 0.25 -0.4
737,361 - GFF683 0.25 +0.2
737,594 + GFF683 0.51 +0.7
737,595 - GFF683 0.51 +0.9
737,595 - GFF683 0.51 -0.6

Or see this region's nucleotide sequence