Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6778 and GFF6779 are separated by 60 nucleotides GFF6779 and GFF6780 are separated by 302 nucleotides
GFF6778 - possible endonuclease/exonuclease/phosphatase family protein, at 24,755 to 25,852
GFF6778
GFF6779 - ATP-dependent RNA helicase RhlE (EC 3.6.4.13), at 25,913 to 27,718
GFF6779
GFF6780 - Energy-dependent translational throttle protein EttA, at 28,021 to 29,682
GFF6780
Position (kb) 25
26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 24.993 kb on + strand, within GFF6778 at 24.994 kb on - strand, within GFF6778 at 25.032 kb on + strand, within GFF6778 at 25.033 kb on - strand, within GFF6778 at 25.033 kb on - strand, within GFF6778 at 25.554 kb on + strand, within GFF6778 at 25.692 kb on + strand, within GFF6778 at 25.693 kb on - strand, within GFF6778 at 25.693 kb on - strand, within GFF6778 at 25.710 kb on + strand, within GFF6778 at 25.710 kb on + strand, within GFF6778 at 25.710 kb on + strand, within GFF6778 at 25.710 kb on + strand, within GFF6778 at 25.711 kb on - strand, within GFF6778 at 25.714 kb on - strand, within GFF6778 at 25.773 kb on + strand at 25.773 kb on + strand at 25.773 kb on + strand at 25.773 kb on + strand at 25.774 kb on - strand at 25.774 kb on - strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.788 kb on + strand at 25.789 kb on - strand at 25.789 kb on - strand at 25.789 kb on - strand at 25.789 kb on - strand at 25.789 kb on - strand at 25.789 kb on - strand at 25.789 kb on - strand at 25.789 kb on - strand at 25.789 kb on - strand at 25.789 kb on - strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.885 kb on + strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 25.886 kb on - strand at 26.727 kb on + strand, within GFF6779 at 26.727 kb on + strand, within GFF6779 at 26.727 kb on + strand, within GFF6779 at 26.727 kb on + strand, within GFF6779 at 26.727 kb on + strand, within GFF6779 at 26.727 kb on + strand, within GFF6779 at 26.728 kb on - strand, within GFF6779 at 26.728 kb on - strand, within GFF6779 at 26.728 kb on - strand, within GFF6779 at 26.728 kb on - strand, within GFF6779 at 26.754 kb on + strand, within GFF6779 at 27.110 kb on + strand, within GFF6779 at 27.111 kb on - strand, within GFF6779 at 27.411 kb on + strand, within GFF6779 at 27.411 kb on + strand, within GFF6779 at 27.412 kb on - strand, within GFF6779 at 27.412 kb on - strand, within GFF6779 at 27.412 kb on - strand, within GFF6779 at 27.420 kb on + strand, within GFF6779 at 27.421 kb on - strand, within GFF6779 at 27.553 kb on + strand at 27.553 kb on + strand at 27.554 kb on - strand at 27.657 kb on + strand at 27.658 kb on - strand at 27.658 kb on - strand at 27.728 kb on + strand at 27.728 kb on + strand at 27.729 kb on - strand at 27.737 kb on + strand at 27.917 kb on + strand at 27.917 kb on + strand at 27.917 kb on + strand at 27.917 kb on + strand at 27.918 kb on - strand at 27.918 kb on - strand at 27.918 kb on - strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 28.008 kb on + strand at 28.008 kb on + strand at 28.008 kb on + strand at 28.008 kb on + strand at 28.008 kb on + strand at 28.009 kb on - strand at 28.009 kb on - strand at 28.009 kb on - strand at 28.012 kb on + strand at 28.012 kb on + strand at 28.012 kb on + strand at 28.013 kb on - strand at 28.013 kb on - strand at 28.013 kb on - strand at 28.030 kb on + strand at 28.030 kb on + strand at 28.030 kb on + strand at 28.030 kb on + strand at 28.030 kb on + strand at 28.031 kb on - strand at 28.031 kb on - strand at 28.036 kb on + strand at 28.039 kb on + strand at 28.193 kb on - strand, within GFF6780 at 28.237 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.342 kb on + strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.343 kb on - strand, within GFF6780 at 28.675 kb on + strand, within GFF6780 at 28.675 kb on + strand, within GFF6780 at 28.675 kb on + strand, within GFF6780 at 28.676 kb on - strand, within GFF6780 at 28.676 kb on - strand, within GFF6780 at 28.676 kb on - strand, within GFF6780 at 28.676 kb on - strand, within GFF6780
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 24,993 + GFF6778 0.22 +0.3 24,994 - GFF6778 0.22 -0.2 25,032 + GFF6778 0.25 +0.1 25,033 - GFF6778 0.25 -1.1 25,033 - GFF6778 0.25 -0.4 25,554 + GFF6778 0.73 +0.1 25,692 + GFF6778 0.85 -0.5 25,693 - GFF6778 0.85 +1.5 25,693 - GFF6778 0.85 -0.1 25,710 + GFF6778 0.87 -0.2 25,710 + GFF6778 0.87 -1.0 25,710 + GFF6778 0.87 -0.5 25,710 + GFF6778 0.87 +1.2 25,711 - GFF6778 0.87 -0.6 25,714 - GFF6778 0.87 +0.1 25,773 + +0.1 25,773 + +0.0 25,773 + +0.0 25,773 + -0.1 25,774 - -0.5 25,774 - +0.5 25,788 + -0.3 25,788 + +0.5 25,788 + -0.7 25,788 + +0.1 25,788 + +0.4 25,788 + -0.5 25,788 + +1.1 25,788 + -0.5 25,788 + -1.5 25,788 + -0.5 25,788 + +0.3 25,788 + -1.9 25,788 + -0.3 25,789 - -0.7 25,789 - +0.5 25,789 - -0.5 25,789 - +0.1 25,789 - -0.1 25,789 - -0.3 25,789 - -0.5 25,789 - -0.6 25,789 - +0.6 25,789 - +0.5 25,885 + +0.2 25,885 + +0.7 25,885 + +0.1 25,885 + -0.3 25,885 + +0.1 25,885 + -1.3 25,885 + -0.1 25,885 + -0.3 25,885 + -0.5 25,885 + +1.5 25,885 + +2.8 25,885 + -0.5 25,885 + +0.4 25,885 + +0.4 25,885 + -0.6 25,885 + -0.9 25,885 + +0.2 25,885 + -0.6 25,885 + -0.2 25,885 + +0.5 25,885 + -0.9 25,885 + +0.1 25,885 + -1.3 25,885 + +0.5 25,886 - -0.2 25,886 - +0.5 25,886 - -0.4 25,886 - -0.8 25,886 - -0.3 25,886 - +0.4 25,886 - -0.5 25,886 - -0.9 25,886 - -0.8 25,886 - -0.1 25,886 - -0.5 25,886 - -0.4 25,886 - -0.5 25,886 - -0.0 25,886 - +0.0 25,886 - -0.8 26,727 + GFF6779 0.45 -0.1 26,727 + GFF6779 0.45 +0.4 26,727 + GFF6779 0.45 +1.8 26,727 + GFF6779 0.45 +0.5 26,727 + GFF6779 0.45 -1.0 26,727 + GFF6779 0.45 -0.8 26,728 - GFF6779 0.45 -0.7 26,728 - GFF6779 0.45 +1.3 26,728 - GFF6779 0.45 -0.1 26,728 - GFF6779 0.45 -0.3 26,754 + GFF6779 0.47 +0.2 27,110 + GFF6779 0.66 -0.3 27,111 - GFF6779 0.66 +0.2 27,411 + GFF6779 0.83 +1.2 27,411 + GFF6779 0.83 +0.8 27,412 - GFF6779 0.83 -0.6 27,412 - GFF6779 0.83 +1.1 27,412 - GFF6779 0.83 -0.1 27,420 + GFF6779 0.83 +0.4 27,421 - GFF6779 0.83 +1.1 27,553 + -0.7 27,553 + -0.5 27,554 - +0.2 27,657 + +0.8 27,658 - +0.3 27,658 - +0.4 27,728 + -0.4 27,728 + +0.5 27,729 - -0.5 27,737 + -0.6 27,917 + +0.2 27,917 + +0.6 27,917 + -1.3 27,917 + +0.0 27,918 - +0.8 27,918 - +0.5 27,918 - -0.4 27,999 + -0.4 27,999 + +0.5 27,999 + -0.2 28,008 + -0.3 28,008 + -0.4 28,008 + -0.3 28,008 + +1.0 28,008 + +0.4 28,009 - -0.2 28,009 - -0.7 28,009 - -0.3 28,012 + -0.0 28,012 + +0.8 28,012 + -0.3 28,013 - +0.5 28,013 - +0.8 28,013 - -0.7 28,030 + +0.6 28,030 + -0.9 28,030 + +1.4 28,030 + +0.1 28,030 + -0.5 28,031 - -0.4 28,031 - +1.8 28,036 + -0.4 28,039 + +1.0 28,193 - GFF6780 0.10 -0.0 28,237 + GFF6780 0.13 -1.8 28,342 + GFF6780 0.19 +0.0 28,342 + GFF6780 0.19 -0.6 28,342 + GFF6780 0.19 +0.1 28,342 + GFF6780 0.19 -1.0 28,342 + GFF6780 0.19 -1.2 28,342 + GFF6780 0.19 +0.6 28,342 + GFF6780 0.19 -0.2 28,342 + GFF6780 0.19 +0.6 28,342 + GFF6780 0.19 -0.8 28,342 + GFF6780 0.19 -0.2 28,342 + GFF6780 0.19 +0.5 28,342 + GFF6780 0.19 -0.5 28,342 + GFF6780 0.19 -0.2 28,342 + GFF6780 0.19 +0.2 28,343 - GFF6780 0.19 +0.4 28,343 - GFF6780 0.19 +1.2 28,343 - GFF6780 0.19 +0.8 28,343 - GFF6780 0.19 +0.0 28,343 - GFF6780 0.19 +0.2 28,343 - GFF6780 0.19 -0.0 28,343 - GFF6780 0.19 +0.7 28,343 - GFF6780 0.19 +0.4 28,343 - GFF6780 0.19 -1.2 28,343 - GFF6780 0.19 +0.2 28,343 - GFF6780 0.19 -0.6 28,675 + GFF6780 0.39 -0.6 28,675 + GFF6780 0.39 +1.0 28,675 + GFF6780 0.39 +0.2 28,676 - GFF6780 0.39 -0.3 28,676 - GFF6780 0.39 +0.6 28,676 - GFF6780 0.39 -0.5 28,676 - GFF6780 0.39 -0.4
Or see this region's nucleotide sequence