Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6765 and GFF6766 are separated by 22 nucleotides GFF6766 and GFF6767 are separated by 45 nucleotides GFF6767 and GFF6768 are separated by 12 nucleotides
GFF6765 - Uncharacterized MFS-type transporter, at 11,431 to 12,744
GFF6765
GFF6766 - MATE efflux family protein, at 12,767 to 14,188
GFF6766
GFF6767 - no description, at 14,234 to 14,944
GFF6767
GFF6768 - hypothetical protein, at 14,957 to 15,271
GFF6768
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 12.052 kb on + strand, within GFF6765 at 12.343 kb on + strand, within GFF6765 at 12.344 kb on - strand, within GFF6765 at 12.370 kb on + strand, within GFF6765 at 12.374 kb on - strand, within GFF6765 at 12.374 kb on - strand, within GFF6765 at 12.374 kb on - strand, within GFF6765 at 12.374 kb on - strand, within GFF6765 at 12.374 kb on - strand, within GFF6765 at 12.427 kb on + strand, within GFF6765 at 12.427 kb on + strand, within GFF6765 at 12.427 kb on + strand, within GFF6765 at 12.428 kb on - strand, within GFF6765 at 12.428 kb on - strand, within GFF6765 at 12.428 kb on - strand, within GFF6765 at 12.428 kb on - strand, within GFF6765 at 12.454 kb on + strand, within GFF6765 at 12.454 kb on + strand, within GFF6765 at 12.454 kb on + strand, within GFF6765 at 12.454 kb on + strand, within GFF6765 at 12.455 kb on - strand, within GFF6765 at 12.455 kb on - strand, within GFF6765 at 12.455 kb on - strand, within GFF6765 at 12.455 kb on - strand, within GFF6765 at 12.455 kb on - strand, within GFF6765 at 12.455 kb on - strand, within GFF6765 at 12.455 kb on - strand, within GFF6765 at 12.586 kb on + strand, within GFF6765 at 12.622 kb on + strand at 12.622 kb on + strand at 12.622 kb on + strand at 12.622 kb on + strand at 12.622 kb on + strand at 12.622 kb on + strand at 12.623 kb on - strand at 12.623 kb on - strand at 12.623 kb on - strand at 12.623 kb on - strand at 12.623 kb on - strand at 12.623 kb on - strand at 12.637 kb on + strand at 12.911 kb on + strand, within GFF6766 at 12.912 kb on - strand, within GFF6766 at 12.912 kb on - strand, within GFF6766 at 12.912 kb on - strand, within GFF6766 at 12.912 kb on - strand, within GFF6766 at 12.912 kb on - strand, within GFF6766 at 12.912 kb on - strand, within GFF6766 at 13.154 kb on + strand, within GFF6766 at 13.202 kb on + strand, within GFF6766 at 13.203 kb on - strand, within GFF6766 at 13.203 kb on - strand, within GFF6766 at 13.412 kb on + strand, within GFF6766 at 13.412 kb on + strand, within GFF6766 at 13.412 kb on + strand, within GFF6766 at 13.412 kb on + strand, within GFF6766 at 13.413 kb on - strand, within GFF6766 at 13.413 kb on - strand, within GFF6766 at 13.413 kb on - strand, within GFF6766 at 13.413 kb on - strand, within GFF6766 at 13.413 kb on - strand, within GFF6766 at 13.413 kb on - strand, within GFF6766 at 13.415 kb on + strand, within GFF6766 at 13.415 kb on + strand, within GFF6766 at 13.415 kb on + strand, within GFF6766 at 13.415 kb on + strand, within GFF6766 at 13.415 kb on + strand, within GFF6766 at 13.416 kb on - strand, within GFF6766 at 13.416 kb on - strand, within GFF6766 at 13.416 kb on - strand, within GFF6766 at 13.445 kb on + strand, within GFF6766 at 13.653 kb on - strand, within GFF6766 at 13.653 kb on - strand, within GFF6766 at 13.653 kb on - strand, within GFF6766 at 13.653 kb on - strand, within GFF6766 at 13.877 kb on + strand, within GFF6766 at 13.877 kb on + strand, within GFF6766 at 13.877 kb on + strand, within GFF6766 at 13.877 kb on + strand, within GFF6766 at 13.877 kb on + strand, within GFF6766 at 13.878 kb on - strand, within GFF6766 at 13.901 kb on + strand, within GFF6766 at 13.901 kb on + strand, within GFF6766 at 13.931 kb on + strand, within GFF6766 at 13.931 kb on + strand, within GFF6766 at 14.085 kb on - strand at 14.085 kb on - strand at 14.334 kb on - strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.664 kb on - strand, within GFF6767 at 14.664 kb on - strand, within GFF6767 at 14.664 kb on - strand, within GFF6767 at 14.922 kb on - strand at 14.961 kb on + strand at 14.962 kb on - strand at 14.962 kb on - strand at 14.967 kb on + strand at 14.968 kb on - strand at 14.992 kb on - strand, within GFF6768 at 15.064 kb on - strand, within GFF6768 at 15.066 kb on + strand, within GFF6768 at 15.067 kb on - strand, within GFF6768 at 15.067 kb on - strand, within GFF6768 at 15.067 kb on - strand, within GFF6768 at 15.085 kb on - strand, within GFF6768 at 15.102 kb on + strand, within GFF6768 at 15.102 kb on + strand, within GFF6768 at 15.102 kb on + strand, within GFF6768 at 15.102 kb on + strand, within GFF6768 at 15.105 kb on + strand, within GFF6768 at 15.106 kb on - strand, within GFF6768 at 15.106 kb on - strand, within GFF6768 at 15.126 kb on + strand, within GFF6768 at 15.126 kb on + strand, within GFF6768 at 15.127 kb on - strand, within GFF6768 at 15.127 kb on - strand, within GFF6768 at 15.127 kb on - strand, within GFF6768 at 15.129 kb on + strand, within GFF6768 at 15.129 kb on + strand, within GFF6768 at 15.130 kb on - strand, within GFF6768 at 15.130 kb on - strand, within GFF6768 at 15.130 kb on - strand, within GFF6768 at 15.130 kb on - strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 12,052 + GFF6765 0.47 -0.8 12,343 + GFF6765 0.69 -0.2 12,344 - GFF6765 0.69 +0.2 12,370 + GFF6765 0.71 -0.8 12,374 - GFF6765 0.72 +0.0 12,374 - GFF6765 0.72 +1.1 12,374 - GFF6765 0.72 -0.5 12,374 - GFF6765 0.72 -0.5 12,374 - GFF6765 0.72 +1.2 12,427 + GFF6765 0.76 +0.6 12,427 + GFF6765 0.76 +1.1 12,427 + GFF6765 0.76 -0.6 12,428 - GFF6765 0.76 -0.2 12,428 - GFF6765 0.76 -0.2 12,428 - GFF6765 0.76 -1.8 12,428 - GFF6765 0.76 -0.1 12,454 + GFF6765 0.78 +0.8 12,454 + GFF6765 0.78 +1.0 12,454 + GFF6765 0.78 +0.2 12,454 + GFF6765 0.78 +0.3 12,455 - GFF6765 0.78 +1.0 12,455 - GFF6765 0.78 -1.2 12,455 - GFF6765 0.78 -0.3 12,455 - GFF6765 0.78 -0.3 12,455 - GFF6765 0.78 +0.5 12,455 - GFF6765 0.78 -0.8 12,455 - GFF6765 0.78 +0.5 12,586 + GFF6765 0.88 -0.5 12,622 + -0.7 12,622 + -0.6 12,622 + +0.5 12,622 + +1.0 12,622 + +0.7 12,622 + +1.8 12,623 - -0.8 12,623 - -0.4 12,623 - -0.8 12,623 - -0.2 12,623 - -0.8 12,623 - -0.6 12,637 + -1.8 12,911 + GFF6766 0.10 +0.2 12,912 - GFF6766 0.10 +3.4 12,912 - GFF6766 0.10 +1.0 12,912 - GFF6766 0.10 +0.2 12,912 - GFF6766 0.10 -2.3 12,912 - GFF6766 0.10 -0.6 12,912 - GFF6766 0.10 +0.6 13,154 + GFF6766 0.27 +1.0 13,202 + GFF6766 0.31 +0.5 13,203 - GFF6766 0.31 -1.3 13,203 - GFF6766 0.31 -0.5 13,412 + GFF6766 0.45 +0.7 13,412 + GFF6766 0.45 -1.3 13,412 + GFF6766 0.45 -1.3 13,412 + GFF6766 0.45 +1.1 13,413 - GFF6766 0.45 -1.2 13,413 - GFF6766 0.45 +0.0 13,413 - GFF6766 0.45 -0.5 13,413 - GFF6766 0.45 -0.7 13,413 - GFF6766 0.45 -0.0 13,413 - GFF6766 0.45 +0.8 13,415 + GFF6766 0.46 +0.0 13,415 + GFF6766 0.46 +1.2 13,415 + GFF6766 0.46 -0.1 13,415 + GFF6766 0.46 -0.2 13,415 + GFF6766 0.46 -0.2 13,416 - GFF6766 0.46 -0.8 13,416 - GFF6766 0.46 -0.1 13,416 - GFF6766 0.46 +0.8 13,445 + GFF6766 0.48 -0.9 13,653 - GFF6766 0.62 +0.2 13,653 - GFF6766 0.62 -0.2 13,653 - GFF6766 0.62 -0.1 13,653 - GFF6766 0.62 +1.3 13,877 + GFF6766 0.78 +1.2 13,877 + GFF6766 0.78 +0.8 13,877 + GFF6766 0.78 -0.6 13,877 + GFF6766 0.78 +1.8 13,877 + GFF6766 0.78 -0.4 13,878 - GFF6766 0.78 +0.3 13,901 + GFF6766 0.80 -0.5 13,901 + GFF6766 0.80 -1.0 13,931 + GFF6766 0.82 -0.5 13,931 + GFF6766 0.82 +0.3 14,085 - +0.8 14,085 - -1.6 14,334 - GFF6767 0.14 +1.8 14,663 + GFF6767 0.60 -0.9 14,663 + GFF6767 0.60 -0.8 14,663 + GFF6767 0.60 +0.8 14,663 + GFF6767 0.60 +0.5 14,663 + GFF6767 0.60 +1.3 14,663 + GFF6767 0.60 -0.1 14,663 + GFF6767 0.60 -1.5 14,664 - GFF6767 0.60 -0.6 14,664 - GFF6767 0.60 -0.5 14,664 - GFF6767 0.60 -0.7 14,922 - -0.5 14,961 + -0.6 14,962 - +0.4 14,962 - +0.8 14,967 + -0.4 14,968 - -0.8 14,992 - GFF6768 0.11 +0.7 15,064 - GFF6768 0.34 -0.6 15,066 + GFF6768 0.35 -0.2 15,067 - GFF6768 0.35 -0.0 15,067 - GFF6768 0.35 -0.5 15,067 - GFF6768 0.35 -0.5 15,085 - GFF6768 0.41 +1.2 15,102 + GFF6768 0.46 -0.5 15,102 + GFF6768 0.46 +1.1 15,102 + GFF6768 0.46 -1.0 15,102 + GFF6768 0.46 +0.1 15,105 + GFF6768 0.47 +0.2 15,106 - GFF6768 0.47 -1.3 15,106 - GFF6768 0.47 +0.2 15,126 + GFF6768 0.54 +0.2 15,126 + GFF6768 0.54 +0.1 15,127 - GFF6768 0.54 -0.4 15,127 - GFF6768 0.54 -0.1 15,127 - GFF6768 0.54 -0.3 15,129 + GFF6768 0.55 -0.3 15,129 + GFF6768 0.55 -0.2 15,130 - GFF6768 0.55 +0.8 15,130 - GFF6768 0.55 -0.8 15,130 - GFF6768 0.55 -0.6 15,130 - GFF6768 0.55 -0.3 15,162 + GFF6768 0.65 +0.4 15,162 + GFF6768 0.65 -1.3 15,162 + GFF6768 0.65 -0.5 15,162 + GFF6768 0.65 +0.5 15,162 + GFF6768 0.65 +0.2 15,162 + GFF6768 0.65 -0.9 15,163 - GFF6768 0.65 -1.6 15,163 - GFF6768 0.65 -0.5 15,163 - GFF6768 0.65 -0.4 15,163 - GFF6768 0.65 +0.8 15,163 - GFF6768 0.65 +0.2 15,163 - GFF6768 0.65 -0.6 15,163 - GFF6768 0.65 +0.3
Or see this region's nucleotide sequence