Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6714 and GFF6715 are separated by 10 nucleotides GFF6715 and GFF6716 overlap by 8 nucleotides GFF6716 and GFF6717 are separated by 150 nucleotides
GFF6714 - Putative cryptic D-serine deaminase (EC 4.3.1.18), at 22,301 to 23,617
GFF6714
GFF6715 - Transcriptional regulator of RpiR family in catabolic operon, at 23,628 to 24,527
GFF6715
GFF6716 - N-acyl-D-amino-acid deacylase (EC 3.5.1.81), at 24,520 to 26,001
GFF6716
GFF6717 - hypothetical protein, at 26,152 to 28,392
GFF6717
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.663 kb on - strand at 24.034 kb on - strand, within GFF6715 at 24.123 kb on + strand, within GFF6715 at 24.123 kb on + strand, within GFF6715 at 24.123 kb on + strand, within GFF6715 at 24.124 kb on - strand, within GFF6715 at 24.354 kb on + strand, within GFF6715 at 24.354 kb on + strand, within GFF6715 at 24.382 kb on + strand, within GFF6715 at 24.382 kb on + strand, within GFF6715 at 25.117 kb on + strand, within GFF6716 at 25.118 kb on - strand, within GFF6716 at 25.118 kb on - strand, within GFF6716 at 25.192 kb on + strand, within GFF6716 at 25.390 kb on + strand, within GFF6716 at 25.390 kb on + strand, within GFF6716 at 25.391 kb on - strand, within GFF6716 at 25.391 kb on - strand, within GFF6716 at 25.391 kb on - strand, within GFF6716 at 25.391 kb on - strand, within GFF6716 at 25.396 kb on + strand, within GFF6716 at 25.574 kb on - strand, within GFF6716 at 25.870 kb on + strand at 25.870 kb on + strand at 25.870 kb on + strand at 25.870 kb on + strand at 26.043 kb on + strand at 26.069 kb on + strand at 26.163 kb on + strand at 26.253 kb on + strand at 26.253 kb on + strand at 26.254 kb on - strand at 26.254 kb on - strand at 26.357 kb on - strand at 26.479 kb on + strand, within GFF6717 at 26.725 kb on + strand, within GFF6717 at 26.725 kb on + strand, within GFF6717 at 26.726 kb on - strand, within GFF6717 at 26.752 kb on + strand, within GFF6717 at 26.752 kb on + strand, within GFF6717 at 26.753 kb on - strand, within GFF6717 at 26.828 kb on + strand, within GFF6717 at 26.829 kb on - strand, within GFF6717 at 26.829 kb on - strand, within GFF6717 at 26.852 kb on - strand, within GFF6717 at 26.914 kb on + strand, within GFF6717 at 26.914 kb on + strand, within GFF6717
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 23,663 - -0.1 24,034 - GFF6715 0.45 -0.0 24,123 + GFF6715 0.55 +1.0 24,123 + GFF6715 0.55 -2.1 24,123 + GFF6715 0.55 -0.6 24,124 - GFF6715 0.55 -0.0 24,354 + GFF6715 0.81 -0.9 24,354 + GFF6715 0.81 -0.7 24,382 + GFF6715 0.84 -0.5 24,382 + GFF6715 0.84 -0.4 25,117 + GFF6716 0.40 +0.4 25,118 - GFF6716 0.40 -0.0 25,118 - GFF6716 0.40 +0.4 25,192 + GFF6716 0.45 -1.2 25,390 + GFF6716 0.59 -0.2 25,390 + GFF6716 0.59 +0.4 25,391 - GFF6716 0.59 +0.2 25,391 - GFF6716 0.59 +0.5 25,391 - GFF6716 0.59 +1.2 25,391 - GFF6716 0.59 +0.2 25,396 + GFF6716 0.59 -0.0 25,574 - GFF6716 0.71 -0.6 25,870 + -0.8 25,870 + -0.5 25,870 + -0.2 25,870 + +0.5 26,043 + -0.3 26,069 + -1.0 26,163 + +0.5 26,253 + -0.7 26,253 + -0.6 26,254 - +0.2 26,254 - -0.0 26,357 - -0.3 26,479 + GFF6717 0.15 -0.4 26,725 + GFF6717 0.26 -0.3 26,725 + GFF6717 0.26 +0.1 26,726 - GFF6717 0.26 -0.7 26,752 + GFF6717 0.27 -0.6 26,752 + GFF6717 0.27 -0.7 26,753 - GFF6717 0.27 +2.0 26,828 + GFF6717 0.30 -0.7 26,829 - GFF6717 0.30 -0.2 26,829 - GFF6717 0.30 -0.8 26,852 - GFF6717 0.31 -0.4 26,914 + GFF6717 0.34 -0.9 26,914 + GFF6717 0.34 +0.1
Or see this region's nucleotide sequence