Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6581 and GFF6582 are separated by 217 nucleotides GFF6582 and GFF6583 are separated by 24 nucleotides GFF6583 and GFF6584 are separated by 336 nucleotides
GFF6581 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 21,671 to 23,680
GFF6581
GFF6582 - Conjugative transfer protein TrbK, at 23,898 to 24,125
GFF6582
GFF6583 - Transcriptional regulator, LysR family, at 24,150 to 25,064
GFF6583
GFF6584 - Pyruvate kinase (EC 2.7.1.40), at 25,401 to 26,834
GFF6584
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 23.192 kb on + strand, within GFF6581 at 23.193 kb on - strand, within GFF6581 at 23.268 kb on + strand, within GFF6581 at 23.269 kb on - strand, within GFF6581 at 23.294 kb on + strand, within GFF6581 at 23.294 kb on + strand, within GFF6581 at 23.294 kb on + strand, within GFF6581 at 23.361 kb on + strand, within GFF6581 at 23.362 kb on - strand, within GFF6581 at 23.527 kb on - strand at 23.527 kb on - strand at 23.527 kb on - strand at 23.527 kb on - strand at 23.527 kb on - strand at 23.570 kb on + strand at 23.899 kb on + strand at 23.899 kb on + strand at 23.900 kb on - strand at 23.900 kb on - strand at 24.256 kb on + strand, within GFF6583 at 24.256 kb on + strand, within GFF6583 at 24.256 kb on + strand, within GFF6583 at 24.306 kb on + strand, within GFF6583 at 24.307 kb on - strand, within GFF6583 at 24.307 kb on - strand, within GFF6583 at 24.336 kb on - strand, within GFF6583 at 24.336 kb on - strand, within GFF6583 at 24.389 kb on - strand, within GFF6583 at 24.389 kb on - strand, within GFF6583 at 24.389 kb on - strand, within GFF6583 at 24.500 kb on - strand, within GFF6583 at 24.530 kb on + strand, within GFF6583 at 24.531 kb on - strand, within GFF6583 at 24.532 kb on + strand, within GFF6583 at 24.533 kb on - strand, within GFF6583 at 24.533 kb on - strand, within GFF6583 at 24.644 kb on - strand, within GFF6583 at 24.644 kb on - strand, within GFF6583 at 25.177 kb on + strand at 25.285 kb on + strand at 25.285 kb on + strand at 25.286 kb on - strand at 25.289 kb on + strand at 25.289 kb on + strand at 25.289 kb on + strand at 25.289 kb on + strand at 25.289 kb on + strand at 25.290 kb on - strand at 25.305 kb on - strand at 25.305 kb on - strand at 25.403 kb on - strand at 25.433 kb on + strand at 25.463 kb on + strand at 25.463 kb on + strand at 25.464 kb on - strand at 25.467 kb on + strand at 25.468 kb on - strand at 25.557 kb on + strand, within GFF6584 at 25.557 kb on + strand, within GFF6584 at 25.558 kb on - strand, within GFF6584 at 25.620 kb on - strand, within GFF6584 at 25.620 kb on - strand, within GFF6584 at 25.810 kb on + strand, within GFF6584 at 25.811 kb on - strand, within GFF6584 at 25.873 kb on + strand, within GFF6584 at 25.873 kb on + strand, within GFF6584 at 25.924 kb on + strand, within GFF6584 at 25.925 kb on - strand, within GFF6584 at 25.925 kb on - strand, within GFF6584 at 25.925 kb on - strand, within GFF6584
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 23,192 + GFF6581 0.76 -0.2 23,193 - GFF6581 0.76 -0.0 23,268 + GFF6581 0.79 +1.8 23,269 - GFF6581 0.80 +0.1 23,294 + GFF6581 0.81 +1.2 23,294 + GFF6581 0.81 +0.3 23,294 + GFF6581 0.81 +0.9 23,361 + GFF6581 0.84 -0.6 23,362 - GFF6581 0.84 -0.1 23,527 - +0.8 23,527 - -0.6 23,527 - -0.1 23,527 - -0.2 23,527 - +0.2 23,570 + -0.8 23,899 + -1.5 23,899 + +0.1 23,900 - -0.4 23,900 - -0.6 24,256 + GFF6583 0.12 -0.5 24,256 + GFF6583 0.12 -0.3 24,256 + GFF6583 0.12 -0.4 24,306 + GFF6583 0.17 +1.0 24,307 - GFF6583 0.17 -0.6 24,307 - GFF6583 0.17 +0.7 24,336 - GFF6583 0.20 +1.3 24,336 - GFF6583 0.20 -1.0 24,389 - GFF6583 0.26 -0.9 24,389 - GFF6583 0.26 -0.1 24,389 - GFF6583 0.26 -1.6 24,500 - GFF6583 0.38 +0.4 24,530 + GFF6583 0.42 -1.4 24,531 - GFF6583 0.42 -0.2 24,532 + GFF6583 0.42 -0.5 24,533 - GFF6583 0.42 -0.0 24,533 - GFF6583 0.42 -0.2 24,644 - GFF6583 0.54 -0.4 24,644 - GFF6583 0.54 -0.8 25,177 + -1.4 25,285 + +1.1 25,285 + -0.4 25,286 - +0.9 25,289 + +0.1 25,289 + +1.0 25,289 + -0.4 25,289 + -0.1 25,289 + -0.2 25,290 - -0.3 25,305 - +0.2 25,305 - +0.7 25,403 - -0.7 25,433 + +0.3 25,463 + +0.3 25,463 + -0.8 25,464 - +0.3 25,467 + -0.8 25,468 - +3.7 25,557 + GFF6584 0.11 +1.6 25,557 + GFF6584 0.11 +0.8 25,558 - GFF6584 0.11 -1.8 25,620 - GFF6584 0.15 -0.6 25,620 - GFF6584 0.15 +0.8 25,810 + GFF6584 0.29 -1.0 25,811 - GFF6584 0.29 -2.3 25,873 + GFF6584 0.33 +0.2 25,873 + GFF6584 0.33 +1.2 25,924 + GFF6584 0.36 +0.0 25,925 - GFF6584 0.37 +0.8 25,925 - GFF6584 0.37 -1.7 25,925 - GFF6584 0.37 +0.4
Or see this region's nucleotide sequence