Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6387 and GFF6388 are separated by 20 nucleotides GFF6388 and GFF6389 overlap by 46 nucleotides
GFF6387 - Ferredoxin--NADP(+) reductase (EC 1.18.1.2) @ Flavodoxin--NADP(+) reductase (EC 1.19.1.1), at 60,163 to 60,936
GFF6387
GFF6388 - Transcriptional regulator, AcrR family, at 60,957 to 61,712
GFF6388
GFF6389 - Amidohydrolase domain protein, at 61,667 to 62,866
GFF6389
Position (kb) 60
61
62 Strain fitness (log2 ratio) -2
-1
0
1
2 at 59.996 kb on + strand at 60.163 kb on - strand at 60.934 kb on + strand at 60.934 kb on + strand at 60.934 kb on + strand at 60.934 kb on + strand at 60.935 kb on - strand at 61.077 kb on + strand, within GFF6388 at 61.078 kb on - strand, within GFF6388 at 61.078 kb on - strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.143 kb on + strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.144 kb on - strand, within GFF6388 at 61.146 kb on + strand, within GFF6388 at 61.146 kb on + strand, within GFF6388 at 61.146 kb on + strand, within GFF6388 at 61.146 kb on + strand, within GFF6388 at 61.149 kb on + strand, within GFF6388 at 61.149 kb on + strand, within GFF6388 at 61.197 kb on + strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.198 kb on - strand, within GFF6388 at 61.290 kb on + strand, within GFF6388 at 61.290 kb on + strand, within GFF6388 at 61.291 kb on - strand, within GFF6388 at 61.293 kb on + strand, within GFF6388 at 61.293 kb on + strand, within GFF6388 at 61.476 kb on + strand, within GFF6388 at 61.476 kb on + strand, within GFF6388 at 61.477 kb on - strand, within GFF6388 at 61.477 kb on - strand, within GFF6388 at 61.477 kb on - strand, within GFF6388 at 61.477 kb on - strand, within GFF6388 at 61.501 kb on - strand, within GFF6388 at 61.501 kb on - strand, within GFF6388 at 61.506 kb on + strand, within GFF6388 at 61.506 kb on + strand, within GFF6388 at 61.507 kb on - strand, within GFF6388 at 61.507 kb on - strand, within GFF6388 at 61.507 kb on - strand, within GFF6388 at 61.630 kb on + strand, within GFF6388 at 61.630 kb on + strand, within GFF6388 at 61.630 kb on + strand, within GFF6388 at 61.630 kb on + strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.631 kb on - strand, within GFF6388 at 61.710 kb on + strand at 61.711 kb on - strand at 62.213 kb on + strand, within GFF6389 at 62.249 kb on + strand, within GFF6389 at 62.250 kb on - strand, within GFF6389 at 62.368 kb on + strand, within GFF6389 at 62.369 kb on - strand, within GFF6389 at 62.369 kb on - strand, within GFF6389 at 62.369 kb on - strand, within GFF6389
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 59,996 + +1.3 60,163 - +0.2 60,934 + +0.4 60,934 + -0.3 60,934 + -0.5 60,934 + +1.3 60,935 - -0.0 61,077 + GFF6388 0.16 -0.8 61,078 - GFF6388 0.16 -1.4 61,078 - GFF6388 0.16 -0.2 61,143 + GFF6388 0.25 -1.6 61,143 + GFF6388 0.25 +0.2 61,143 + GFF6388 0.25 -1.9 61,143 + GFF6388 0.25 -0.9 61,143 + GFF6388 0.25 -1.3 61,144 - GFF6388 0.25 -0.3 61,144 - GFF6388 0.25 -0.3 61,144 - GFF6388 0.25 -1.5 61,144 - GFF6388 0.25 -0.8 61,144 - GFF6388 0.25 -0.3 61,144 - GFF6388 0.25 +0.7 61,144 - GFF6388 0.25 +0.5 61,144 - GFF6388 0.25 -0.2 61,146 + GFF6388 0.25 -1.1 61,146 + GFF6388 0.25 -0.8 61,146 + GFF6388 0.25 -1.6 61,146 + GFF6388 0.25 -0.5 61,149 + GFF6388 0.25 -0.9 61,149 + GFF6388 0.25 -0.7 61,197 + GFF6388 0.32 -1.1 61,198 - GFF6388 0.32 +1.1 61,198 - GFF6388 0.32 +0.3 61,198 - GFF6388 0.32 -0.3 61,198 - GFF6388 0.32 -0.9 61,198 - GFF6388 0.32 -0.5 61,198 - GFF6388 0.32 -0.9 61,290 + GFF6388 0.44 +0.1 61,290 + GFF6388 0.44 -0.3 61,291 - GFF6388 0.44 +0.1 61,293 + GFF6388 0.44 -0.1 61,293 + GFF6388 0.44 -0.3 61,476 + GFF6388 0.69 -1.0 61,476 + GFF6388 0.69 -1.3 61,477 - GFF6388 0.69 +0.5 61,477 - GFF6388 0.69 +1.3 61,477 - GFF6388 0.69 +2.1 61,477 - GFF6388 0.69 -0.3 61,501 - GFF6388 0.72 -0.9 61,501 - GFF6388 0.72 -1.1 61,506 + GFF6388 0.73 +0.8 61,506 + GFF6388 0.73 +1.2 61,507 - GFF6388 0.73 -0.4 61,507 - GFF6388 0.73 -0.1 61,507 - GFF6388 0.73 -1.2 61,630 + GFF6388 0.89 +0.5 61,630 + GFF6388 0.89 +0.3 61,630 + GFF6388 0.89 +0.0 61,630 + GFF6388 0.89 -0.3 61,631 - GFF6388 0.89 +0.6 61,631 - GFF6388 0.89 +1.1 61,631 - GFF6388 0.89 -1.0 61,631 - GFF6388 0.89 -0.2 61,631 - GFF6388 0.89 +0.6 61,631 - GFF6388 0.89 +0.7 61,710 + -0.7 61,711 - +0.9 62,213 + GFF6389 0.46 -0.4 62,249 + GFF6389 0.48 -0.3 62,250 - GFF6389 0.49 -1.3 62,368 + GFF6389 0.58 +0.3 62,369 - GFF6389 0.58 +0.1 62,369 - GFF6389 0.58 -0.3 62,369 - GFF6389 0.58 +0.3
Or see this region's nucleotide sequence