Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6371 and GFF6372 are separated by 24 nucleotides GFF6372 and GFF6373 are separated by 87 nucleotides GFF6373 and GFF6374 are separated by 133 nucleotides
GFF6371 - T6SS component TssC (ImpC/VipB), at 40,188 to 41,696
GFF6371
GFF6372 - T6SS component TssB (ImpB/VipA), at 41,721 to 42,293
GFF6372
GFF6373 - T6SS component TssA (ImpA), at 42,381 to 43,472
GFF6373
GFF6374 - predicted 2-keto-3-deoxyxylonate dehydratase, at 43,606 to 44,799
GFF6374
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1 at 41.383 kb on + strand, within GFF6371 at 41.881 kb on + strand, within GFF6372 at 41.881 kb on + strand, within GFF6372 at 41.882 kb on - strand, within GFF6372 at 42.202 kb on + strand, within GFF6372 at 42.217 kb on + strand, within GFF6372 at 42.294 kb on - strand at 42.429 kb on + strand at 42.597 kb on + strand, within GFF6373 at 42.654 kb on - strand, within GFF6373 at 42.950 kb on - strand, within GFF6373 at 43.046 kb on + strand, within GFF6373 at 43.443 kb on + strand at 43.444 kb on - strand at 43.444 kb on - strand at 43.493 kb on - strand at 43.551 kb on + strand at 43.551 kb on + strand at 43.552 kb on - strand at 43.552 kb on - strand at 43.575 kb on + strand at 43.575 kb on + strand at 43.677 kb on + strand at 43.677 kb on + strand at 44.376 kb on + strand, within GFF6374
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 41,383 + GFF6371 0.79 +0.9 41,881 + GFF6372 0.28 -0.9 41,881 + GFF6372 0.28 -0.3 41,882 - GFF6372 0.28 -0.4 42,202 + GFF6372 0.84 -0.6 42,217 + GFF6372 0.87 -1.4 42,294 - -0.6 42,429 + +0.4 42,597 + GFF6373 0.20 +0.5 42,654 - GFF6373 0.25 -0.3 42,950 - GFF6373 0.52 -0.3 43,046 + GFF6373 0.61 -0.0 43,443 + -0.8 43,444 - -0.7 43,444 - -0.3 43,493 - -0.9 43,551 + +0.3 43,551 + -0.6 43,552 - -0.4 43,552 - -1.3 43,575 + -0.0 43,575 + +1.6 43,677 + +0.0 43,677 + -0.4 44,376 + GFF6374 0.64 +0.5
Or see this region's nucleotide sequence