Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF629 and GFF630 are separated by 6 nucleotides GFF630 and GFF631 are separated by 16 nucleotides GFF631 and GFF632 are separated by 24 nucleotides GFF632 and GFF633 are separated by 1 nucleotides
GFF629 - hypothetical protein, at 678,524 to 679,903
GFF629
GFF630 - CxxC_CXXC_SSSS domain protein, FmdB family, at 679,910 to 680,254
GFF630
GFF631 - Formamidase (EC 3.5.1.49), at 680,271 to 681,503
GFF631
GFF632 - Urea ABC transporter, ATPase protein UrtE, at 681,528 to 682,229
GFF632
GFF633 - Urea ABC transporter, ATPase protein UrtD, at 682,231 to 682,974
GFF633
Position (kb) 680
681
682 Strain fitness (log2 ratio) -2
-1
0
1 at 680.244 kb on + strand at 680.244 kb on + strand at 680.245 kb on - strand at 680.474 kb on - strand, within GFF631 at 680.599 kb on + strand, within GFF631 at 680.599 kb on + strand, within GFF631 at 680.600 kb on - strand, within GFF631 at 680.600 kb on - strand, within GFF631 at 680.600 kb on - strand, within GFF631 at 680.647 kb on + strand, within GFF631 at 680.648 kb on - strand, within GFF631 at 680.648 kb on - strand, within GFF631 at 680.785 kb on + strand, within GFF631 at 680.785 kb on + strand, within GFF631 at 681.541 kb on + strand at 681.979 kb on + strand, within GFF632 at 681.979 kb on + strand, within GFF632
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 680,244 + +0.6 680,244 + -0.2 680,245 - +1.3 680,474 - GFF631 0.16 +0.4 680,599 + GFF631 0.27 +0.1 680,599 + GFF631 0.27 +0.9 680,600 - GFF631 0.27 +0.5 680,600 - GFF631 0.27 +1.0 680,600 - GFF631 0.27 +0.1 680,647 + GFF631 0.30 -0.6 680,648 - GFF631 0.31 +1.4 680,648 - GFF631 0.31 -0.3 680,785 + GFF631 0.42 +0.9 680,785 + GFF631 0.42 -0.6 681,541 + +0.3 681,979 + GFF632 0.64 +0.3 681,979 + GFF632 0.64 -2.1
Or see this region's nucleotide sequence