Strain Fitness in Variovorax sp. SCN45 around GFF6222

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6221 and GFF6222 overlap by 4 nucleotidesGFF6222 and GFF6223 overlap by 4 nucleotides GFF6221 - T6SS associated component TagF (ImpM), at 102 to 740 GFF6221 GFF6222 - T6SS component TssM (IcmF/VasK), at 737 to 4,339 GFF6222 GFF6223 - T6SS outer membrane component TssL (ImpK/VasF) / OmpA/MotB domain, at 4,336 to 5,664 GFF6223 Position (kb) 0 1 2 3 4 5Strain fitness (log2 ratio) -1 0 1 2 3at 0.454 kb on + strand, within GFF6221at 0.557 kb on - strand, within GFF6221at 1.233 kb on + strand, within GFF6222at 1.233 kb on + strand, within GFF6222at 1.234 kb on - strand, within GFF6222at 1.605 kb on + strand, within GFF6222at 1.605 kb on + strand, within GFF6222at 1.605 kb on + strand, within GFF6222at 1.605 kb on + strand, within GFF6222at 1.605 kb on + strand, within GFF6222at 1.606 kb on - strand, within GFF6222at 1.606 kb on - strand, within GFF6222at 1.606 kb on - strand, within GFF6222at 1.606 kb on - strand, within GFF6222at 1.606 kb on - strand, within GFF6222at 1.606 kb on - strand, within GFF6222at 1.606 kb on - strand, within GFF6222at 1.606 kb on - strand, within GFF6222at 1.606 kb on - strand, within GFF6222at 1.992 kb on + strand, within GFF6222at 1.992 kb on + strand, within GFF6222at 1.993 kb on - strand, within GFF6222at 1.993 kb on - strand, within GFF6222at 1.993 kb on - strand, within GFF6222at 2.154 kb on + strand, within GFF6222at 2.155 kb on - strand, within GFF6222at 2.163 kb on + strand, within GFF6222at 2.164 kb on - strand, within GFF6222at 2.326 kb on - strand, within GFF6222at 2.529 kb on + strand, within GFF6222at 2.559 kb on + strand, within GFF6222at 2.559 kb on + strand, within GFF6222at 2.559 kb on + strand, within GFF6222at 2.560 kb on - strand, within GFF6222at 2.560 kb on - strand, within GFF6222at 2.565 kb on + strand, within GFF6222at 2.566 kb on - strand, within GFF6222at 2.869 kb on - strand, within GFF6222at 2.892 kb on + strand, within GFF6222at 2.893 kb on - strand, within GFF6222at 2.893 kb on - strand, within GFF6222at 2.893 kb on - strand, within GFF6222at 3.045 kb on + strand, within GFF6222at 3.045 kb on + strand, within GFF6222at 3.045 kb on + strand, within GFF6222at 3.045 kb on + strand, within GFF6222at 3.045 kb on + strand, within GFF6222at 3.046 kb on - strand, within GFF6222at 3.162 kb on + strand, within GFF6222at 3.162 kb on + strand, within GFF6222at 3.163 kb on - strand, within GFF6222at 3.163 kb on - strand, within GFF6222at 3.163 kb on - strand, within GFF6222at 3.163 kb on - strand, within GFF6222at 3.163 kb on - strand, within GFF6222at 3.469 kb on - strand, within GFF6222at 3.483 kb on + strand, within GFF6222at 3.484 kb on - strand, within GFF6222at 3.513 kb on + strand, within GFF6222at 3.514 kb on - strand, within GFF6222at 3.514 kb on - strand, within GFF6222at 3.514 kb on - strand, within GFF6222at 3.514 kb on - strand, within GFF6222at 3.738 kb on + strand, within GFF6222at 3.738 kb on + strand, within GFF6222at 3.912 kb on + strand, within GFF6222at 3.912 kb on + strand, within GFF6222at 3.913 kb on - strand, within GFF6222at 3.927 kb on + strand, within GFF6222at 3.927 kb on + strand, within GFF6222at 3.933 kb on + strand, within GFF6222at 3.933 kb on + strand, within GFF6222at 3.933 kb on + strand, within GFF6222at 3.934 kb on - strand, within GFF6222at 3.934 kb on - strand, within GFF6222at 3.934 kb on - strand, within GFF6222at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.862 kb on + strand, within GFF6223at 4.863 kb on - strand, within GFF6223at 4.863 kb on - strand, within GFF6223at 4.880 kb on + strand, within GFF6223at 4.880 kb on + strand, within GFF6223at 4.881 kb on - strand, within GFF6223at 5.141 kb on + strand, within GFF6223at 5.141 kb on + strand, within GFF6223at 5.141 kb on + strand, within GFF6223at 5.141 kb on + strand, within GFF6223at 5.142 kb on - strand, within GFF6223at 5.327 kb on + strand, within GFF6223at 5.328 kb on - strand, within GFF6223at 5.328 kb on - strand, within GFF6223

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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454 + GFF6221 0.55 +0.3
557 - GFF6221 0.71 +1.5
1,233 + GFF6222 0.14 +0.2
1,233 + GFF6222 0.14 +0.2
1,234 - GFF6222 0.14 +0.1
1,605 + GFF6222 0.24 +0.5
1,605 + GFF6222 0.24 -0.4
1,605 + GFF6222 0.24 +0.2
1,605 + GFF6222 0.24 +0.4
1,605 + GFF6222 0.24 -1.2
1,606 - GFF6222 0.24 -0.4
1,606 - GFF6222 0.24 +0.2
1,606 - GFF6222 0.24 -0.6
1,606 - GFF6222 0.24 +1.0
1,606 - GFF6222 0.24 +0.1
1,606 - GFF6222 0.24 +0.3
1,606 - GFF6222 0.24 +0.1
1,606 - GFF6222 0.24 +0.6
1,606 - GFF6222 0.24 +0.1
1,992 + GFF6222 0.35 +2.2
1,992 + GFF6222 0.35 +0.8
1,993 - GFF6222 0.35 -0.8
1,993 - GFF6222 0.35 -0.5
1,993 - GFF6222 0.35 +0.1
2,154 + GFF6222 0.39 -0.7
2,155 - GFF6222 0.39 +0.0
2,163 + GFF6222 0.40 -0.9
2,164 - GFF6222 0.40 -0.1
2,326 - GFF6222 0.44 +0.2
2,529 + GFF6222 0.50 +0.4
2,559 + GFF6222 0.51 +0.6
2,559 + GFF6222 0.51 -0.9
2,559 + GFF6222 0.51 +0.2
2,560 - GFF6222 0.51 -0.3
2,560 - GFF6222 0.51 +1.1
2,565 + GFF6222 0.51 -0.4
2,566 - GFF6222 0.51 -0.5
2,869 - GFF6222 0.59 +0.3
2,892 + GFF6222 0.60 +2.0
2,893 - GFF6222 0.60 +0.1
2,893 - GFF6222 0.60 +0.4
2,893 - GFF6222 0.60 +0.7
3,045 + GFF6222 0.64 +0.1
3,045 + GFF6222 0.64 -1.3
3,045 + GFF6222 0.64 -0.5
3,045 + GFF6222 0.64 +0.3
3,045 + GFF6222 0.64 -0.8
3,046 - GFF6222 0.64 -1.6
3,162 + GFF6222 0.67 -0.4
3,162 + GFF6222 0.67 +0.0
3,163 - GFF6222 0.67 +0.3
3,163 - GFF6222 0.67 -0.6
3,163 - GFF6222 0.67 -0.5
3,163 - GFF6222 0.67 -0.1
3,163 - GFF6222 0.67 -0.2
3,469 - GFF6222 0.76 +0.2
3,483 + GFF6222 0.76 -0.6
3,484 - GFF6222 0.76 +2.2
3,513 + GFF6222 0.77 -1.1
3,514 - GFF6222 0.77 +1.4
3,514 - GFF6222 0.77 -0.1
3,514 - GFF6222 0.77 -1.2
3,514 - GFF6222 0.77 -0.5
3,738 + GFF6222 0.83 +1.5
3,738 + GFF6222 0.83 -1.0
3,912 + GFF6222 0.88 +0.6
3,912 + GFF6222 0.88 +0.4
3,913 - GFF6222 0.88 -0.5
3,927 + GFF6222 0.89 +0.3
3,927 + GFF6222 0.89 +1.3
3,933 + GFF6222 0.89 -0.6
3,933 + GFF6222 0.89 -0.3
3,933 + GFF6222 0.89 -0.2
3,934 - GFF6222 0.89 -0.5
3,934 - GFF6222 0.89 -0.3
3,934 - GFF6222 0.89 +0.2
4,862 + GFF6223 0.40 +1.2
4,862 + GFF6223 0.40 +2.8
4,862 + GFF6223 0.40 -0.6
4,862 + GFF6223 0.40 -0.8
4,862 + GFF6223 0.40 -0.0
4,862 + GFF6223 0.40 -0.1
4,862 + GFF6223 0.40 -0.1
4,862 + GFF6223 0.40 -0.3
4,862 + GFF6223 0.40 -0.1
4,863 - GFF6223 0.40 -1.0
4,863 - GFF6223 0.40 -0.6
4,880 + GFF6223 0.41 -1.6
4,880 + GFF6223 0.41 -0.8
4,881 - GFF6223 0.41 -1.4
5,141 + GFF6223 0.61 +0.2
5,141 + GFF6223 0.61 +0.3
5,141 + GFF6223 0.61 +0.7
5,141 + GFF6223 0.61 -1.2
5,142 - GFF6223 0.61 -0.3
5,327 + GFF6223 0.75 -0.7
5,328 - GFF6223 0.75 -1.6
5,328 - GFF6223 0.75 -0.4

Or see this region's nucleotide sequence