Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5997 and GFF5998 are separated by 103 nucleotides GFF5998 and GFF5999 are separated by 106 nucleotides GFF5999 and GFF6000 are separated by 11 nucleotides GFF6000 and GFF6001 are separated by 10 nucleotides
GFF5997 - hypothetical protein, at 56,095 to 56,664
GFF5997
GFF5998 - Uncharacterized protein YiiX, at 56,768 to 57,394
GFF5998
GFF5999 - DNA polymerase IV (EC 2.7.7.7), at 57,501 to 58,688
GFF5999
GFF6000 - hypothetical protein, at 58,700 to 59,389
GFF6000
GFF6001 - Purine nucleoside permease, at 59,400 to 60,455
GFF6001
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1 at 56.511 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.511 kb on - strand, within GFF5997 at 56.934 kb on - strand, within GFF5998 at 57.006 kb on - strand, within GFF5998 at 57.050 kb on + strand, within GFF5998 at 57.051 kb on - strand, within GFF5998 at 57.051 kb on - strand, within GFF5998 at 57.146 kb on + strand, within GFF5998 at 57.182 kb on + strand, within GFF5998 at 57.182 kb on + strand, within GFF5998 at 57.182 kb on + strand, within GFF5998 at 57.183 kb on - strand, within GFF5998 at 57.513 kb on + strand at 57.513 kb on + strand at 57.514 kb on - strand at 57.514 kb on - strand at 57.669 kb on + strand, within GFF5999 at 57.702 kb on + strand, within GFF5999 at 57.801 kb on + strand, within GFF5999 at 57.882 kb on + strand, within GFF5999 at 57.882 kb on + strand, within GFF5999 at 57.882 kb on + strand, within GFF5999 at 57.882 kb on + strand, within GFF5999 at 57.882 kb on + strand, within GFF5999 at 57.883 kb on - strand, within GFF5999 at 57.883 kb on - strand, within GFF5999 at 57.883 kb on - strand, within GFF5999 at 57.883 kb on - strand, within GFF5999 at 57.883 kb on - strand, within GFF5999 at 57.883 kb on - strand, within GFF5999 at 58.049 kb on + strand, within GFF5999 at 58.049 kb on + strand, within GFF5999 at 58.050 kb on - strand, within GFF5999 at 58.416 kb on + strand, within GFF5999 at 58.416 kb on + strand, within GFF5999 at 58.417 kb on - strand, within GFF5999 at 58.417 kb on - strand, within GFF5999 at 58.417 kb on - strand, within GFF5999 at 58.417 kb on - strand, within GFF5999 at 58.417 kb on - strand, within GFF5999 at 58.417 kb on - strand, within GFF5999 at 58.417 kb on - strand, within GFF5999 at 58.450 kb on - strand, within GFF5999 at 58.450 kb on - strand, within GFF5999 at 58.450 kb on - strand, within GFF5999 at 58.767 kb on - strand at 58.767 kb on - strand at 58.767 kb on - strand at 58.767 kb on - strand at 58.767 kb on - strand at 58.858 kb on - strand, within GFF6000 at 58.883 kb on + strand, within GFF6000 at 58.883 kb on + strand, within GFF6000 at 58.884 kb on - strand, within GFF6000 at 58.884 kb on - strand, within GFF6000 at 58.884 kb on - strand, within GFF6000 at 58.884 kb on - strand, within GFF6000 at 58.927 kb on - strand, within GFF6000 at 58.927 kb on - strand, within GFF6000 at 58.927 kb on - strand, within GFF6000 at 59.004 kb on - strand, within GFF6000 at 59.093 kb on + strand, within GFF6000 at 59.094 kb on - strand, within GFF6000 at 59.094 kb on - strand, within GFF6000 at 59.094 kb on - strand, within GFF6000 at 59.094 kb on - strand, within GFF6000 at 59.153 kb on + strand, within GFF6000 at 59.247 kb on - strand, within GFF6000 at 59.247 kb on - strand, within GFF6000 at 59.247 kb on - strand, within GFF6000 at 59.247 kb on - strand, within GFF6000 at 59.247 kb on - strand, within GFF6000 at 59.264 kb on + strand, within GFF6000 at 59.264 kb on - strand, within GFF6000 at 59.296 kb on - strand, within GFF6000 at 59.371 kb on - strand at 59.371 kb on - strand at 59.371 kb on - strand at 59.371 kb on - strand at 59.371 kb on - strand at 59.371 kb on - strand at 59.668 kb on + strand, within GFF6001 at 59.668 kb on + strand, within GFF6001 at 59.668 kb on + strand, within GFF6001 at 59.669 kb on - strand, within GFF6001 at 59.683 kb on + strand, within GFF6001 at 59.684 kb on - strand, within GFF6001
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 56,511 - GFF5997 0.73 -0.7 56,511 - GFF5997 0.73 +0.7 56,511 - GFF5997 0.73 -0.6 56,934 - GFF5998 0.26 +0.4 57,006 - GFF5998 0.38 -0.3 57,050 + GFF5998 0.45 -0.3 57,051 - GFF5998 0.45 -0.8 57,051 - GFF5998 0.45 +0.8 57,146 + GFF5998 0.60 -0.2 57,182 + GFF5998 0.66 -1.4 57,182 + GFF5998 0.66 -0.3 57,182 + GFF5998 0.66 +0.7 57,183 - GFF5998 0.66 -0.1 57,513 + +0.0 57,513 + +0.1 57,514 - +0.2 57,514 - +0.2 57,669 + GFF5999 0.14 +1.0 57,702 + GFF5999 0.17 +0.0 57,801 + GFF5999 0.25 -0.2 57,882 + GFF5999 0.32 +0.0 57,882 + GFF5999 0.32 +0.2 57,882 + GFF5999 0.32 +0.5 57,882 + GFF5999 0.32 -0.4 57,882 + GFF5999 0.32 +0.1 57,883 - GFF5999 0.32 -0.6 57,883 - GFF5999 0.32 +0.8 57,883 - GFF5999 0.32 +0.6 57,883 - GFF5999 0.32 +0.2 57,883 - GFF5999 0.32 +0.4 57,883 - GFF5999 0.32 -0.2 58,049 + GFF5999 0.46 -1.2 58,049 + GFF5999 0.46 -1.0 58,050 - GFF5999 0.46 +1.3 58,416 + GFF5999 0.77 +0.4 58,416 + GFF5999 0.77 +0.1 58,417 - GFF5999 0.77 -0.2 58,417 - GFF5999 0.77 +1.4 58,417 - GFF5999 0.77 -0.6 58,417 - GFF5999 0.77 +0.4 58,417 - GFF5999 0.77 -0.6 58,417 - GFF5999 0.77 -0.3 58,417 - GFF5999 0.77 +1.4 58,450 - GFF5999 0.80 +0.2 58,450 - GFF5999 0.80 -1.6 58,450 - GFF5999 0.80 +0.4 58,767 - -0.5 58,767 - -0.6 58,767 - -0.5 58,767 - +0.0 58,767 - -0.7 58,858 - GFF6000 0.23 +0.3 58,883 + GFF6000 0.27 +0.8 58,883 + GFF6000 0.27 +0.3 58,884 - GFF6000 0.27 +0.3 58,884 - GFF6000 0.27 -1.4 58,884 - GFF6000 0.27 +0.4 58,884 - GFF6000 0.27 -0.6 58,927 - GFF6000 0.33 +0.2 58,927 - GFF6000 0.33 -0.3 58,927 - GFF6000 0.33 -0.8 59,004 - GFF6000 0.44 -0.2 59,093 + GFF6000 0.57 +0.9 59,094 - GFF6000 0.57 -0.5 59,094 - GFF6000 0.57 -0.5 59,094 - GFF6000 0.57 -1.3 59,094 - GFF6000 0.57 -0.7 59,153 + GFF6000 0.66 -0.3 59,247 - GFF6000 0.79 -0.0 59,247 - GFF6000 0.79 +0.2 59,247 - GFF6000 0.79 -0.8 59,247 - GFF6000 0.79 +0.1 59,247 - GFF6000 0.79 -0.8 59,264 + GFF6000 0.82 -1.5 59,264 - GFF6000 0.82 +0.4 59,296 - GFF6000 0.86 -1.0 59,371 - -1.5 59,371 - +0.2 59,371 - +0.7 59,371 - -0.3 59,371 - +0.2 59,371 - -0.9 59,668 + GFF6001 0.25 -1.3 59,668 + GFF6001 0.25 -0.2 59,668 + GFF6001 0.25 +0.1 59,669 - GFF6001 0.25 +0.0 59,683 + GFF6001 0.27 -0.3 59,684 - GFF6001 0.27 -0.5
Or see this region's nucleotide sequence