Strain Fitness in Variovorax sp. SCN45 around GFF5994

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5993 and GFF5994 overlap by 4 nucleotidesGFF5994 and GFF5995 are separated by 121 nucleotides GFF5993 - putative membrane protein, at 49,927 to 51,273 GFF5993 GFF5994 - Chlorogenate esterase, at 51,270 to 54,026 GFF5994 GFF5995 - LysR family transcriptional regulator STM3121, at 54,148 to 55,083 GFF5995 Position (kb) 51 52 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2 3at 50.687 kb on + strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.693 kb on + strand, within GFF5993at 50.693 kb on + strand, within GFF5993at 50.693 kb on + strand, within GFF5993at 50.724 kb on - strand, within GFF5993at 50.805 kb on - strand, within GFF5993at 50.805 kb on - strand, within GFF5993at 50.840 kb on + strand, within GFF5993at 50.840 kb on + strand, within GFF5993at 50.940 kb on - strand, within GFF5993at 51.110 kb on + strand, within GFF5993at 51.111 kb on - strand, within GFF5993at 51.140 kb on + strandat 51.141 kb on - strandat 51.279 kb on + strandat 51.279 kb on + strandat 51.403 kb on + strandat 51.403 kb on + strandat 51.404 kb on - strandat 51.435 kb on - strandat 51.493 kb on + strandat 51.493 kb on + strandat 51.493 kb on + strandat 51.494 kb on - strandat 51.494 kb on - strandat 51.494 kb on - strandat 51.494 kb on - strandat 51.706 kb on + strand, within GFF5994at 51.715 kb on + strand, within GFF5994at 51.715 kb on + strand, within GFF5994at 51.716 kb on - strand, within GFF5994at 51.749 kb on - strand, within GFF5994at 51.784 kb on + strand, within GFF5994at 51.795 kb on - strand, within GFF5994at 51.795 kb on - strand, within GFF5994at 51.875 kb on + strand, within GFF5994at 51.875 kb on + strand, within GFF5994at 52.036 kb on + strand, within GFF5994at 52.036 kb on + strand, within GFF5994at 52.036 kb on + strand, within GFF5994at 52.037 kb on - strand, within GFF5994at 52.037 kb on - strand, within GFF5994at 52.037 kb on - strand, within GFF5994at 52.120 kb on + strand, within GFF5994at 52.121 kb on - strand, within GFF5994at 52.183 kb on + strand, within GFF5994at 52.184 kb on - strand, within GFF5994at 52.184 kb on - strand, within GFF5994at 52.249 kb on + strand, within GFF5994at 52.249 kb on + strand, within GFF5994at 52.250 kb on - strand, within GFF5994at 52.286 kb on - strand, within GFF5994at 52.331 kb on - strand, within GFF5994at 52.331 kb on - strand, within GFF5994at 52.331 kb on - strand, within GFF5994at 52.465 kb on + strand, within GFF5994at 52.465 kb on + strand, within GFF5994at 52.522 kb on + strand, within GFF5994at 52.523 kb on - strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.756 kb on + strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.757 kb on - strand, within GFF5994at 52.825 kb on + strand, within GFF5994at 52.826 kb on - strand, within GFF5994at 52.862 kb on - strand, within GFF5994at 52.897 kb on + strand, within GFF5994at 52.898 kb on - strand, within GFF5994at 52.898 kb on - strand, within GFF5994at 53.045 kb on + strand, within GFF5994at 53.045 kb on + strand, within GFF5994at 53.046 kb on - strand, within GFF5994at 53.046 kb on - strand, within GFF5994at 53.152 kb on + strand, within GFF5994at 53.153 kb on - strand, within GFF5994at 53.153 kb on - strand, within GFF5994at 53.155 kb on + strand, within GFF5994at 53.155 kb on + strand, within GFF5994at 53.201 kb on - strand, within GFF5994at 53.201 kb on - strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.237 kb on - strand, within GFF5994at 53.237 kb on - strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.261 kb on - strand, within GFF5994at 53.261 kb on - strand, within GFF5994at 53.261 kb on - strand, within GFF5994at 53.302 kb on + strand, within GFF5994at 53.302 kb on + strand, within GFF5994at 53.302 kb on + strand, within GFF5994at 53.303 kb on - strand, within GFF5994at 53.303 kb on - strand, within GFF5994at 53.326 kb on + strand, within GFF5994at 53.327 kb on - strand, within GFF5994at 53.327 kb on - strand, within GFF5994at 53.386 kb on + strand, within GFF5994at 53.387 kb on - strand, within GFF5994at 53.465 kb on - strand, within GFF5994at 53.465 kb on - strand, within GFF5994at 53.473 kb on + strand, within GFF5994at 53.474 kb on - strand, within GFF5994at 53.668 kb on + strand, within GFF5994at 53.668 kb on + strand, within GFF5994at 53.669 kb on - strand, within GFF5994at 54.088 kb on + strandat 54.088 kb on + strandat 54.088 kb on + strandat 54.088 kb on + strandat 54.104 kb on + strandat 54.104 kb on + strandat 54.104 kb on + strandat 54.105 kb on - strandat 54.115 kb on - strandat 54.119 kb on + strandat 54.119 kb on + strandat 54.120 kb on - strandat 54.145 kb on + strandat 54.145 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.156 kb on - strandat 54.156 kb on - strandat 54.169 kb on + strandat 54.169 kb on + strandat 54.775 kb on + strand, within GFF5995at 54.775 kb on + strand, within GFF5995at 54.776 kb on - strand, within GFF5995at 54.934 kb on + strand, within GFF5995at 54.934 kb on + strand, within GFF5995at 54.934 kb on + strand, within GFF5995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
50,687 + GFF5993 0.56 -0.5
50,688 - GFF5993 0.56 +0.5
50,688 - GFF5993 0.56 +2.0
50,688 - GFF5993 0.56 -0.8
50,688 - GFF5993 0.56 +0.4
50,688 - GFF5993 0.56 +0.7
50,693 + GFF5993 0.57 -0.3
50,693 + GFF5993 0.57 -0.5
50,693 + GFF5993 0.57 -1.1
50,724 - GFF5993 0.59 +1.0
50,805 - GFF5993 0.65 -0.4
50,805 - GFF5993 0.65 -0.3
50,840 + GFF5993 0.68 +0.1
50,840 + GFF5993 0.68 -0.7
50,940 - GFF5993 0.75 +0.6
51,110 + GFF5993 0.88 +0.3
51,111 - GFF5993 0.88 -0.2
51,140 + -0.9
51,141 - -1.3
51,279 + -0.6
51,279 + +1.3
51,403 + -0.3
51,403 + -1.4
51,404 - +0.2
51,435 - +0.2
51,493 + -0.3
51,493 + -0.1
51,493 + -0.3
51,494 - +0.7
51,494 - +0.4
51,494 - -0.2
51,494 - +0.2
51,706 + GFF5994 0.16 +0.0
51,715 + GFF5994 0.16 -1.5
51,715 + GFF5994 0.16 -1.1
51,716 - GFF5994 0.16 -0.3
51,749 - GFF5994 0.17 -1.0
51,784 + GFF5994 0.19 -1.1
51,795 - GFF5994 0.19 -1.5
51,795 - GFF5994 0.19 -1.7
51,875 + GFF5994 0.22 -0.3
51,875 + GFF5994 0.22 -0.2
52,036 + GFF5994 0.28 -0.3
52,036 + GFF5994 0.28 -0.2
52,036 + GFF5994 0.28 -0.1
52,037 - GFF5994 0.28 -0.5
52,037 - GFF5994 0.28 +0.8
52,037 - GFF5994 0.28 -0.9
52,120 + GFF5994 0.31 -0.1
52,121 - GFF5994 0.31 +0.8
52,183 + GFF5994 0.33 +0.1
52,184 - GFF5994 0.33 -0.8
52,184 - GFF5994 0.33 +1.0
52,249 + GFF5994 0.36 +0.2
52,249 + GFF5994 0.36 +0.0
52,250 - GFF5994 0.36 -0.5
52,286 - GFF5994 0.37 -0.7
52,331 - GFF5994 0.38 -0.4
52,331 - GFF5994 0.38 +0.8
52,331 - GFF5994 0.38 +1.3
52,465 + GFF5994 0.43 -0.4
52,465 + GFF5994 0.43 -0.4
52,522 + GFF5994 0.45 -0.7
52,523 - GFF5994 0.45 +2.0
52,756 + GFF5994 0.54 +0.0
52,756 + GFF5994 0.54 -0.8
52,756 + GFF5994 0.54 -0.3
52,756 + GFF5994 0.54 -0.7
52,756 + GFF5994 0.54 -1.8
52,756 + GFF5994 0.54 +0.5
52,756 + GFF5994 0.54 +0.0
52,756 + GFF5994 0.54 -0.2
52,757 - GFF5994 0.54 +0.5
52,757 - GFF5994 0.54 -0.1
52,757 - GFF5994 0.54 +0.3
52,757 - GFF5994 0.54 -0.6
52,757 - GFF5994 0.54 -0.4
52,757 - GFF5994 0.54 -0.6
52,757 - GFF5994 0.54 +0.1
52,825 + GFF5994 0.56 +0.6
52,826 - GFF5994 0.56 +0.7
52,862 - GFF5994 0.58 +0.0
52,897 + GFF5994 0.59 -0.8
52,898 - GFF5994 0.59 +0.6
52,898 - GFF5994 0.59 -1.2
53,045 + GFF5994 0.64 +0.7
53,045 + GFF5994 0.64 +0.1
53,046 - GFF5994 0.64 -0.0
53,046 - GFF5994 0.64 +3.6
53,152 + GFF5994 0.68 -0.6
53,153 - GFF5994 0.68 -0.5
53,153 - GFF5994 0.68 -0.1
53,155 + GFF5994 0.68 +0.4
53,155 + GFF5994 0.68 -1.0
53,201 - GFF5994 0.70 +1.0
53,201 - GFF5994 0.70 +0.0
53,236 + GFF5994 0.71 -1.5
53,236 + GFF5994 0.71 -0.1
53,236 + GFF5994 0.71 +0.1
53,236 + GFF5994 0.71 -0.4
53,236 + GFF5994 0.71 +0.6
53,237 - GFF5994 0.71 -0.9
53,237 - GFF5994 0.71 +0.9
53,260 + GFF5994 0.72 -0.2
53,260 + GFF5994 0.72 +0.1
53,260 + GFF5994 0.72 -0.2
53,260 + GFF5994 0.72 +0.9
53,260 + GFF5994 0.72 +2.0
53,261 - GFF5994 0.72 -1.0
53,261 - GFF5994 0.72 +0.6
53,261 - GFF5994 0.72 +0.7
53,302 + GFF5994 0.74 -0.9
53,302 + GFF5994 0.74 +2.6
53,302 + GFF5994 0.74 +0.0
53,303 - GFF5994 0.74 -0.2
53,303 - GFF5994 0.74 +0.9
53,326 + GFF5994 0.75 -1.0
53,327 - GFF5994 0.75 +1.1
53,327 - GFF5994 0.75 +0.2
53,386 + GFF5994 0.77 +2.0
53,387 - GFF5994 0.77 -1.1
53,465 - GFF5994 0.80 -1.3
53,465 - GFF5994 0.80 +0.2
53,473 + GFF5994 0.80 +0.6
53,474 - GFF5994 0.80 +0.0
53,668 + GFF5994 0.87 +2.0
53,668 + GFF5994 0.87 -0.5
53,669 - GFF5994 0.87 +0.1
54,088 + +0.6
54,088 + +0.9
54,088 + +0.7
54,088 + +0.2
54,104 + +1.2
54,104 + -1.2
54,104 + -2.2
54,105 - +0.2
54,115 - -0.4
54,119 + -0.3
54,119 + +0.2
54,120 - +3.0
54,145 + +0.4
54,145 + +0.9
54,155 + -0.2
54,155 + -0.7
54,155 + -0.8
54,155 + +0.4
54,155 + -0.4
54,156 - +0.4
54,156 - -0.6
54,169 + -0.8
54,169 + -0.7
54,775 + GFF5995 0.67 -1.0
54,775 + GFF5995 0.67 +0.3
54,776 - GFF5995 0.67 -0.0
54,934 + GFF5995 0.84 -0.9
54,934 + GFF5995 0.84 -0.3
54,934 + GFF5995 0.84 +0.1

Or see this region's nucleotide sequence