Strain Fitness in Variovorax sp. SCN45 around GFF594

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF592 and GFF593 overlap by 1 nucleotidesGFF593 and GFF594 are separated by 143 nucleotidesGFF594 and GFF595 are separated by 18 nucleotidesGFF595 and GFF596 are separated by 72 nucleotides GFF592 - Glutamyl-Q tRNA(Asp) synthetase, at 638,729 to 639,631 GFF592 GFF593 - tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33), at 639,631 to 640,389 GFF593 GFF594 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 640,533 to 641,654 GFF594 GFF595 - Transcriptional regulator, LysR family, at 641,673 to 642,551 GFF595 GFF596 - no description, at 642,624 to 643,160 GFF596 Position (kb) 640 641 642Strain fitness (log2 ratio) -2 -1 0 1 2 3at 639.614 kb on + strandat 639.615 kb on - strandat 639.630 kb on - strandat 639.630 kb on - strandat 639.805 kb on + strand, within GFF593at 639.805 kb on + strand, within GFF593at 639.805 kb on + strand, within GFF593at 639.805 kb on + strand, within GFF593at 639.806 kb on - strand, within GFF593at 639.806 kb on - strand, within GFF593at 639.806 kb on - strand, within GFF593at 639.806 kb on - strand, within GFF593at 639.806 kb on - strand, within GFF593at 639.817 kb on + strand, within GFF593at 639.817 kb on + strand, within GFF593at 639.818 kb on - strand, within GFF593at 639.818 kb on - strand, within GFF593at 639.818 kb on - strand, within GFF593at 639.818 kb on - strand, within GFF593at 640.195 kb on + strand, within GFF593at 640.195 kb on + strand, within GFF593at 640.195 kb on + strand, within GFF593at 640.195 kb on + strand, within GFF593at 640.195 kb on + strand, within GFF593at 640.195 kb on + strand, within GFF593at 640.196 kb on - strand, within GFF593at 640.225 kb on + strand, within GFF593at 640.225 kb on + strand, within GFF593at 640.226 kb on - strand, within GFF593at 640.288 kb on + strand, within GFF593at 640.288 kb on + strand, within GFF593at 640.288 kb on + strand, within GFF593at 640.289 kb on - strand, within GFF593at 640.289 kb on - strand, within GFF593at 640.289 kb on - strand, within GFF593at 640.289 kb on - strand, within GFF593at 640.289 kb on - strand, within GFF593at 640.307 kb on - strand, within GFF593at 640.388 kb on - strandat 640.451 kb on - strandat 640.506 kb on + strandat 640.506 kb on + strandat 640.506 kb on + strandat 640.506 kb on + strandat 640.507 kb on - strandat 640.507 kb on - strandat 640.507 kb on - strandat 640.507 kb on - strandat 640.507 kb on - strandat 640.657 kb on + strand, within GFF594at 640.657 kb on + strand, within GFF594at 640.657 kb on + strand, within GFF594at 640.658 kb on - strand, within GFF594at 640.658 kb on - strand, within GFF594at 640.658 kb on - strand, within GFF594at 640.658 kb on - strand, within GFF594at 640.762 kb on - strand, within GFF594at 641.259 kb on + strand, within GFF594at 641.259 kb on + strand, within GFF594at 641.259 kb on + strand, within GFF594at 641.260 kb on - strand, within GFF594at 641.397 kb on + strand, within GFF594at 641.397 kb on + strand, within GFF594at 641.397 kb on + strand, within GFF594at 641.397 kb on + strand, within GFF594at 641.398 kb on - strand, within GFF594at 641.398 kb on - strand, within GFF594at 641.398 kb on - strand, within GFF594at 641.398 kb on - strand, within GFF594at 641.398 kb on - strand, within GFF594at 641.436 kb on + strand, within GFF594at 641.436 kb on + strand, within GFF594at 641.436 kb on + strand, within GFF594at 641.437 kb on - strand, within GFF594at 641.437 kb on - strand, within GFF594at 641.437 kb on - strand, within GFF594at 641.551 kb on - strandat 641.719 kb on + strandat 641.719 kb on + strandat 641.719 kb on + strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.833 kb on + strand, within GFF595at 641.833 kb on + strand, within GFF595at 641.833 kb on + strand, within GFF595at 641.833 kb on + strand, within GFF595at 641.834 kb on - strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.900 kb on - strand, within GFF595at 641.900 kb on - strand, within GFF595at 641.900 kb on - strand, within GFF595at 641.900 kb on - strand, within GFF595at 641.932 kb on + strand, within GFF595at 641.932 kb on + strand, within GFF595at 641.932 kb on + strand, within GFF595at 641.933 kb on - strand, within GFF595at 641.933 kb on - strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.143 kb on - strand, within GFF595at 642.143 kb on - strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.375 kb on + strand, within GFF595at 642.375 kb on + strand, within GFF595at 642.375 kb on + strand, within GFF595at 642.376 kb on - strand, within GFF595at 642.376 kb on - strand, within GFF595at 642.563 kb on + strandat 642.591 kb on + strandat 642.604 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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639,614 + -0.3
639,615 - -1.5
639,630 - +1.0
639,630 - -0.5
639,805 + GFF593 0.23 -0.0
639,805 + GFF593 0.23 -0.0
639,805 + GFF593 0.23 -0.4
639,805 + GFF593 0.23 -0.4
639,806 - GFF593 0.23 -0.2
639,806 - GFF593 0.23 -0.1
639,806 - GFF593 0.23 +0.9
639,806 - GFF593 0.23 +0.1
639,806 - GFF593 0.23 +0.5
639,817 + GFF593 0.25 +1.4
639,817 + GFF593 0.25 -0.5
639,818 - GFF593 0.25 +2.2
639,818 - GFF593 0.25 +0.5
639,818 - GFF593 0.25 +1.3
639,818 - GFF593 0.25 +1.5
640,195 + GFF593 0.74 -1.2
640,195 + GFF593 0.74 -0.6
640,195 + GFF593 0.74 +1.5
640,195 + GFF593 0.74 -2.6
640,195 + GFF593 0.74 -1.5
640,195 + GFF593 0.74 +2.0
640,196 - GFF593 0.74 -0.8
640,225 + GFF593 0.78 -0.0
640,225 + GFF593 0.78 +1.0
640,226 - GFF593 0.78 -0.1
640,288 + GFF593 0.87 -0.3
640,288 + GFF593 0.87 +1.2
640,288 + GFF593 0.87 +0.2
640,289 - GFF593 0.87 -0.0
640,289 - GFF593 0.87 -0.2
640,289 - GFF593 0.87 -0.7
640,289 - GFF593 0.87 -1.2
640,289 - GFF593 0.87 +0.4
640,307 - GFF593 0.89 -1.2
640,388 - +1.0
640,451 - -0.6
640,506 + +0.2
640,506 + +0.6
640,506 + +0.5
640,506 + -0.0
640,507 - -1.0
640,507 - -0.6
640,507 - -0.1
640,507 - -1.0
640,507 - +0.5
640,657 + GFF594 0.11 +0.7
640,657 + GFF594 0.11 -0.2
640,657 + GFF594 0.11 +2.0
640,658 - GFF594 0.11 +0.9
640,658 - GFF594 0.11 -0.9
640,658 - GFF594 0.11 -0.6
640,658 - GFF594 0.11 -1.2
640,762 - GFF594 0.20 -0.2
641,259 + GFF594 0.65 -0.0
641,259 + GFF594 0.65 -0.4
641,259 + GFF594 0.65 -0.7
641,260 - GFF594 0.65 +0.5
641,397 + GFF594 0.77 +0.2
641,397 + GFF594 0.77 +0.1
641,397 + GFF594 0.77 +0.0
641,397 + GFF594 0.77 +0.7
641,398 - GFF594 0.77 +0.3
641,398 - GFF594 0.77 +0.1
641,398 - GFF594 0.77 +0.0
641,398 - GFF594 0.77 +0.3
641,398 - GFF594 0.77 -0.6
641,436 + GFF594 0.80 +0.1
641,436 + GFF594 0.80 -0.3
641,436 + GFF594 0.80 -0.4
641,437 - GFF594 0.81 +1.0
641,437 - GFF594 0.81 +0.8
641,437 - GFF594 0.81 -0.4
641,551 - -0.3
641,719 + -0.3
641,719 + +0.4
641,719 + +0.2
641,720 - +0.8
641,720 - +0.2
641,720 - -0.3
641,720 - -0.0
641,720 - -1.5
641,720 - +1.1
641,833 + GFF595 0.18 -1.7
641,833 + GFF595 0.18 +0.5
641,833 + GFF595 0.18 -0.2
641,833 + GFF595 0.18 +1.0
641,834 - GFF595 0.18 -0.6
641,899 + GFF595 0.26 +0.8
641,899 + GFF595 0.26 -0.6
641,899 + GFF595 0.26 +1.2
641,899 + GFF595 0.26 +0.5
641,899 + GFF595 0.26 +1.0
641,900 - GFF595 0.26 +0.5
641,900 - GFF595 0.26 -0.4
641,900 - GFF595 0.26 +0.2
641,900 - GFF595 0.26 -0.9
641,932 + GFF595 0.29 -0.9
641,932 + GFF595 0.29 -0.2
641,932 + GFF595 0.29 +0.3
641,933 - GFF595 0.30 +1.0
641,933 - GFF595 0.30 +0.0
642,142 + GFF595 0.53 -0.3
642,142 + GFF595 0.53 +0.5
642,142 + GFF595 0.53 -0.0
642,142 + GFF595 0.53 +3.7
642,142 + GFF595 0.53 +3.0
642,142 + GFF595 0.53 -0.7
642,143 - GFF595 0.53 +1.2
642,143 - GFF595 0.53 -0.8
642,238 + GFF595 0.64 +0.7
642,238 + GFF595 0.64 +0.4
642,238 + GFF595 0.64 -0.1
642,238 + GFF595 0.64 -0.3
642,238 + GFF595 0.64 -1.6
642,238 + GFF595 0.64 -0.4
642,238 + GFF595 0.64 -0.5
642,238 + GFF595 0.64 +0.1
642,238 + GFF595 0.64 -0.8
642,238 + GFF595 0.64 +0.7
642,239 - GFF595 0.64 +0.5
642,239 - GFF595 0.64 +0.9
642,239 - GFF595 0.64 +0.1
642,239 - GFF595 0.64 -0.1
642,239 - GFF595 0.64 +0.0
642,239 - GFF595 0.64 +0.1
642,239 - GFF595 0.64 -0.0
642,239 - GFF595 0.64 -1.0
642,375 + GFF595 0.80 +1.8
642,375 + GFF595 0.80 -0.1
642,375 + GFF595 0.80 -1.5
642,376 - GFF595 0.80 -0.1
642,376 - GFF595 0.80 -0.4
642,563 + -0.6
642,591 + -0.2
642,604 + -0.1

Or see this region's nucleotide sequence