Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5916 and GFF5917 are separated by 58 nucleotides GFF5917 and GFF5918 are separated by 41 nucleotides GFF5918 and GFF5919 are separated by 150 nucleotides GFF5919 and GFF5920 are separated by 94 nucleotides
GFF5916 - T6SS component TssA (ImpA), at 131,309 to 132,349
GFF5916
GFF5917 - T6SS component TssB (ImpB/VipA), at 132,408 to 132,923
GFF5917
GFF5918 - T6SS component TssC (ImpC/VipB), at 132,965 to 134,458
GFF5918
GFF5919 - KEGG: type VI secretion system secreted protein Hcp, at 134,609 to 135,082
GFF5919
GFF5920 - no description, at 135,177 to 136,046
GFF5920
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 132.475 kb on + strand, within GFF5917 at 132.483 kb on + strand, within GFF5917 at 132.484 kb on - strand, within GFF5917 at 133.266 kb on - strand, within GFF5918 at 133.266 kb on - strand, within GFF5918 at 133.400 kb on + strand, within GFF5918 at 133.400 kb on + strand, within GFF5918 at 133.401 kb on - strand, within GFF5918 at 133.631 kb on + strand, within GFF5918 at 133.673 kb on + strand, within GFF5918 at 133.787 kb on + strand, within GFF5918 at 133.788 kb on - strand, within GFF5918 at 133.788 kb on - strand, within GFF5918 at 133.839 kb on - strand, within GFF5918 at 133.839 kb on - strand, within GFF5918 at 134.252 kb on + strand, within GFF5918 at 134.252 kb on + strand, within GFF5918 at 134.253 kb on - strand, within GFF5918 at 134.358 kb on - strand at 134.388 kb on - strand at 134.888 kb on + strand, within GFF5919 at 135.328 kb on - strand, within GFF5920
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 132,475 + GFF5917 0.13 -0.3 132,483 + GFF5917 0.15 -0.1 132,484 - GFF5917 0.15 +0.3 133,266 - GFF5918 0.20 +2.0 133,266 - GFF5918 0.20 +0.5 133,400 + GFF5918 0.29 -0.6 133,400 + GFF5918 0.29 +0.9 133,401 - GFF5918 0.29 -0.7 133,631 + GFF5918 0.45 +0.6 133,673 + GFF5918 0.47 +3.2 133,787 + GFF5918 0.55 -0.6 133,788 - GFF5918 0.55 -1.0 133,788 - GFF5918 0.55 -0.0 133,839 - GFF5918 0.59 -0.2 133,839 - GFF5918 0.59 +0.9 134,252 + GFF5918 0.86 -2.6 134,252 + GFF5918 0.86 +1.2 134,253 - GFF5918 0.86 +1.8 134,358 - -0.8 134,388 - +0.5 134,888 + GFF5919 0.59 +0.2 135,328 - GFF5920 0.17 -0.0
Or see this region's nucleotide sequence