Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5808 and GFF5809 are separated by 190 nucleotides GFF5809 and GFF5810 are separated by 4 nucleotides
GFF5808 - Putative oxidoreductase, at 183,771 to 184,781
GFF5808
GFF5809 - Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system, at 184,972 to 186,465
GFF5809
GFF5810 - Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA, at 186,470 to 187,705
GFF5810
Position (kb) 184
185
186
187 Strain fitness (log2 ratio) -2
-1
0
1
2 at 184.156 kb on - strand, within GFF5808 at 184.242 kb on + strand, within GFF5808 at 184.242 kb on + strand, within GFF5808 at 184.256 kb on + strand, within GFF5808 at 184.320 kb on + strand, within GFF5808 at 184.320 kb on + strand, within GFF5808 at 184.321 kb on - strand, within GFF5808 at 184.342 kb on - strand, within GFF5808 at 184.416 kb on + strand, within GFF5808 at 184.417 kb on - strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.516 kb on - strand, within GFF5808 at 184.704 kb on + strand at 184.704 kb on + strand at 184.705 kb on - strand at 184.925 kb on + strand at 184.957 kb on + strand at 184.957 kb on + strand at 184.958 kb on - strand at 184.958 kb on - strand at 184.958 kb on - strand at 184.997 kb on + strand at 185.059 kb on + strand at 185.059 kb on + strand at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.516 kb on - strand, within GFF5809 at 185.575 kb on + strand, within GFF5809 at 185.609 kb on - strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.956 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.298 kb on + strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.686 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.915 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.254 kb on - strand, within GFF5810
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 184,156 - GFF5808 0.38 -0.4 184,242 + GFF5808 0.47 +0.6 184,242 + GFF5808 0.47 +0.2 184,256 + GFF5808 0.48 -0.3 184,320 + GFF5808 0.54 +1.6 184,320 + GFF5808 0.54 +2.4 184,321 - GFF5808 0.54 +0.4 184,342 - GFF5808 0.56 -0.1 184,416 + GFF5808 0.64 +0.4 184,417 - GFF5808 0.64 +0.8 184,452 + GFF5808 0.67 +0.1 184,452 + GFF5808 0.67 -0.3 184,452 + GFF5808 0.67 -0.2 184,515 + GFF5808 0.74 +0.1 184,515 + GFF5808 0.74 +0.5 184,515 + GFF5808 0.74 -0.6 184,515 + GFF5808 0.74 -0.1 184,516 - GFF5808 0.74 -0.1 184,704 + +0.9 184,704 + -0.0 184,705 - -0.1 184,925 + -0.0 184,957 + +0.4 184,957 + +0.5 184,958 - +0.5 184,958 - +0.7 184,958 - +1.1 184,997 + -0.4 185,059 + +0.9 185,059 + -0.3 185,515 + GFF5809 0.36 +1.3 185,515 + GFF5809 0.36 +0.5 185,515 + GFF5809 0.36 +1.4 185,516 - GFF5809 0.36 +0.0 185,575 + GFF5809 0.40 -0.0 185,609 - GFF5809 0.43 -0.0 185,953 + GFF5809 0.66 +0.5 185,953 + GFF5809 0.66 +0.2 185,954 - GFF5809 0.66 -0.3 185,954 - GFF5809 0.66 -2.1 185,954 - GFF5809 0.66 +0.8 185,954 - GFF5809 0.66 -0.7 185,954 - GFF5809 0.66 +0.5 185,954 - GFF5809 0.66 +0.8 185,956 + GFF5809 0.66 +0.0 186,139 + GFF5809 0.78 -0.6 186,139 + GFF5809 0.78 +0.8 186,139 + GFF5809 0.78 +0.2 186,139 + GFF5809 0.78 +1.7 186,140 - GFF5809 0.78 +0.6 186,140 - GFF5809 0.78 +0.8 186,298 + GFF5809 0.89 -1.8 186,299 - GFF5809 0.89 -0.2 186,299 - GFF5809 0.89 -0.3 186,299 - GFF5809 0.89 -0.3 186,686 + GFF5810 0.17 -1.4 186,914 + GFF5810 0.36 +0.8 186,914 + GFF5810 0.36 -0.4 186,915 - GFF5810 0.36 +0.1 187,026 - GFF5810 0.45 +0.1 187,026 - GFF5810 0.45 -0.3 187,254 - GFF5810 0.63 +0.1
Or see this region's nucleotide sequence