Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5644 and GFF5645 are separated by 24 nucleotides GFF5645 and GFF5646 overlap by 4 nucleotides GFF5646 and GFF5647 overlap by 4 nucleotides GFF5647 and GFF5648 are separated by 10 nucleotides
GFF5644 - Selenophosphate-dependent tRNA 2-selenouridine synthase, at 19,318 to 20,367
GFF5644
GFF5645 - ABC transporter, permease protein (cluster 12, methionine/phosphonates) / ABC transporter, permease protein (cluster 12, methionine/phosphonates), at 20,392 to 21,201
GFF5645
GFF5646 - ABC transporter, permease protein (cluster 12, methionine/phosphonates) / ABC transporter, permease protein (cluster 12, methionine/phosphonates), at 21,198 to 22,037
GFF5646
GFF5647 - ABC transporter, ATP-binding protein (cluster 12, methionine/phosphonates), at 22,034 to 22,846
GFF5647
GFF5648 - ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates), at 22,857 to 23,717
GFF5648
Position (kb) 21
22
23 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 20.210 kb on + strand, within GFF5644 at 20.210 kb on + strand, within GFF5644 at 20.211 kb on - strand, within GFF5644 at 20.211 kb on - strand, within GFF5644 at 20.274 kb on + strand at 20.274 kb on + strand at 20.274 kb on + strand at 20.275 kb on - strand at 20.275 kb on - strand at 20.399 kb on + strand at 20.399 kb on + strand at 20.399 kb on + strand at 20.399 kb on + strand at 20.400 kb on - strand at 20.400 kb on - strand at 20.400 kb on - strand at 20.519 kb on + strand, within GFF5645 at 20.519 kb on + strand, within GFF5645 at 20.520 kb on - strand, within GFF5645 at 20.520 kb on - strand, within GFF5645 at 20.594 kb on + strand, within GFF5645 at 20.642 kb on + strand, within GFF5645 at 20.642 kb on + strand, within GFF5645 at 20.643 kb on - strand, within GFF5645 at 21.098 kb on + strand, within GFF5645 at 21.388 kb on + strand, within GFF5646 at 21.388 kb on + strand, within GFF5646 at 21.388 kb on + strand, within GFF5646 at 21.388 kb on + strand, within GFF5646 at 21.389 kb on - strand, within GFF5646 at 21.389 kb on - strand, within GFF5646 at 21.397 kb on + strand, within GFF5646 at 21.397 kb on + strand, within GFF5646 at 21.520 kb on + strand, within GFF5646 at 21.521 kb on - strand, within GFF5646 at 21.544 kb on + strand, within GFF5646 at 21.544 kb on + strand, within GFF5646 at 21.544 kb on + strand, within GFF5646 at 21.544 kb on + strand, within GFF5646 at 21.544 kb on + strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 21.545 kb on - strand, within GFF5646 at 22.119 kb on + strand, within GFF5647 at 22.119 kb on + strand, within GFF5647 at 22.119 kb on + strand, within GFF5647 at 22.120 kb on - strand, within GFF5647 at 22.362 kb on + strand, within GFF5647 at 22.363 kb on - strand, within GFF5647 at 22.363 kb on - strand, within GFF5647 at 22.363 kb on - strand, within GFF5647 at 22.363 kb on - strand, within GFF5647 at 22.903 kb on + strand at 22.903 kb on + strand at 22.903 kb on + strand at 22.903 kb on + strand at 22.903 kb on + strand at 22.903 kb on + strand at 22.904 kb on - strand at 22.904 kb on - strand at 22.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 20,210 + GFF5644 0.85 -0.4 20,210 + GFF5644 0.85 -1.6 20,211 - GFF5644 0.85 -0.8 20,211 - GFF5644 0.85 -0.9 20,274 + -0.3 20,274 + +0.1 20,274 + -0.5 20,275 - +2.0 20,275 - -0.5 20,399 + -1.1 20,399 + +0.2 20,399 + -0.8 20,399 + -1.9 20,400 - -0.9 20,400 - +0.4 20,400 - -0.2 20,519 + GFF5645 0.16 -0.1 20,519 + GFF5645 0.16 -0.0 20,520 - GFF5645 0.16 -1.2 20,520 - GFF5645 0.16 +1.0 20,594 + GFF5645 0.25 -0.1 20,642 + GFF5645 0.31 -0.1 20,642 + GFF5645 0.31 -0.1 20,643 - GFF5645 0.31 -0.2 21,098 + GFF5645 0.87 +0.4 21,388 + GFF5646 0.23 -0.2 21,388 + GFF5646 0.23 +0.1 21,388 + GFF5646 0.23 +0.2 21,388 + GFF5646 0.23 +1.0 21,389 - GFF5646 0.23 -0.3 21,389 - GFF5646 0.23 -1.1 21,397 + GFF5646 0.24 +1.0 21,397 + GFF5646 0.24 +0.1 21,520 + GFF5646 0.38 -0.8 21,521 - GFF5646 0.38 +0.2 21,544 + GFF5646 0.41 -0.2 21,544 + GFF5646 0.41 +4.9 21,544 + GFF5646 0.41 -0.5 21,544 + GFF5646 0.41 -0.4 21,544 + GFF5646 0.41 +0.7 21,545 - GFF5646 0.41 +0.1 21,545 - GFF5646 0.41 -0.8 21,545 - GFF5646 0.41 -0.4 21,545 - GFF5646 0.41 -1.1 21,545 - GFF5646 0.41 +0.3 21,545 - GFF5646 0.41 +1.0 21,545 - GFF5646 0.41 -0.1 21,545 - GFF5646 0.41 +0.1 21,545 - GFF5646 0.41 +0.6 21,545 - GFF5646 0.41 -0.3 22,119 + GFF5647 0.10 +0.4 22,119 + GFF5647 0.10 +1.0 22,119 + GFF5647 0.10 -0.2 22,120 - GFF5647 0.11 -0.5 22,362 + GFF5647 0.40 -0.2 22,363 - GFF5647 0.40 -0.7 22,363 - GFF5647 0.40 +1.6 22,363 - GFF5647 0.40 -0.5 22,363 - GFF5647 0.40 -1.0 22,903 + +0.4 22,903 + -0.5 22,903 + -1.6 22,903 + -1.2 22,903 + -0.8 22,903 + -0.8 22,904 - +0.4 22,904 - -0.7 22,904 - -0.8
Or see this region's nucleotide sequence