Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5573 and GFF5574 are separated by 30 nucleotides GFF5574 and GFF5575 overlap by 4 nucleotides GFF5575 and GFF5576 are separated by 5 nucleotides
GFF5573 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 193,399 to 194,373
GFF5573
GFF5574 - RidA/YER057c/UK114 superfamily protein, at 194,404 to 194,805
GFF5574
GFF5575 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 194,802 to 196,424
GFF5575
GFF5576 - Acyl-CoA dehydrogenase, at 196,430 to 197,623
GFF5576
Position (kb) 194
195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 193.822 kb on + strand, within GFF5573 at 193.822 kb on + strand, within GFF5573 at 193.823 kb on - strand, within GFF5573 at 194.896 kb on + strand at 195.098 kb on - strand, within GFF5575 at 195.098 kb on - strand, within GFF5575 at 195.137 kb on - strand, within GFF5575 at 195.181 kb on + strand, within GFF5575 at 195.202 kb on + strand, within GFF5575 at 195.202 kb on + strand, within GFF5575 at 195.203 kb on - strand, within GFF5575 at 195.203 kb on - strand, within GFF5575 at 195.355 kb on - strand, within GFF5575 at 195.355 kb on - strand, within GFF5575 at 195.378 kb on - strand, within GFF5575 at 195.378 kb on - strand, within GFF5575 at 195.378 kb on - strand, within GFF5575 at 195.379 kb on + strand, within GFF5575 at 195.380 kb on - strand, within GFF5575 at 195.380 kb on - strand, within GFF5575 at 195.380 kb on - strand, within GFF5575 at 195.541 kb on + strand, within GFF5575 at 195.542 kb on - strand, within GFF5575 at 195.542 kb on - strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.560 kb on - strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.632 kb on - strand, within GFF5575 at 195.632 kb on - strand, within GFF5575 at 196.231 kb on + strand, within GFF5575 at 196.231 kb on + strand, within GFF5575 at 196.232 kb on - strand, within GFF5575 at 196.427 kb on + strand at 196.427 kb on + strand at 196.427 kb on + strand at 196.428 kb on - strand at 196.428 kb on - strand at 196.428 kb on - strand at 196.428 kb on - strand at 196.431 kb on + strand at 196.432 kb on - strand at 196.432 kb on - strand at 196.488 kb on + strand at 196.488 kb on + strand at 196.488 kb on + strand at 196.489 kb on - strand at 196.516 kb on - strand at 196.698 kb on + strand, within GFF5576 at 196.698 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 197.094 kb on + strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.263 kb on - strand, within GFF5576 at 197.263 kb on - strand, within GFF5576 at 197.299 kb on + strand, within GFF5576 at 197.355 kb on + strand, within GFF5576 at 197.356 kb on - strand, within GFF5576
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 193,822 + GFF5573 0.43 +0.5 193,822 + GFF5573 0.43 +1.0 193,823 - GFF5573 0.43 +0.8 194,896 + -0.7 195,098 - GFF5575 0.18 +2.2 195,098 - GFF5575 0.18 +0.6 195,137 - GFF5575 0.21 +0.3 195,181 + GFF5575 0.23 -0.9 195,202 + GFF5575 0.25 +0.2 195,202 + GFF5575 0.25 -0.3 195,203 - GFF5575 0.25 +0.6 195,203 - GFF5575 0.25 -0.5 195,355 - GFF5575 0.34 -1.0 195,355 - GFF5575 0.34 -0.5 195,378 - GFF5575 0.35 +0.9 195,378 - GFF5575 0.35 +0.4 195,378 - GFF5575 0.35 +0.6 195,379 + GFF5575 0.36 -0.4 195,380 - GFF5575 0.36 +0.6 195,380 - GFF5575 0.36 -1.4 195,380 - GFF5575 0.36 -1.1 195,541 + GFF5575 0.46 +0.0 195,542 - GFF5575 0.46 +0.2 195,542 - GFF5575 0.46 +0.2 195,559 + GFF5575 0.47 +1.2 195,559 + GFF5575 0.47 -2.0 195,559 + GFF5575 0.47 +0.3 195,560 - GFF5575 0.47 +0.6 195,631 + GFF5575 0.51 +0.7 195,631 + GFF5575 0.51 -0.3 195,631 + GFF5575 0.51 +4.1 195,632 - GFF5575 0.51 +0.2 195,632 - GFF5575 0.51 +0.1 196,231 + GFF5575 0.88 +1.2 196,231 + GFF5575 0.88 -1.0 196,232 - GFF5575 0.88 -0.3 196,427 + +0.0 196,427 + +0.3 196,427 + -0.4 196,428 - -0.6 196,428 - -1.6 196,428 - +1.0 196,428 - -1.0 196,431 + +0.2 196,432 - -1.0 196,432 - -0.3 196,488 + -0.1 196,488 + +1.2 196,488 + -0.5 196,489 - +0.1 196,516 - +1.4 196,698 + GFF5576 0.22 -0.6 196,698 + GFF5576 0.22 -0.6 196,702 + GFF5576 0.23 -0.1 196,702 + GFF5576 0.23 +0.4 196,702 + GFF5576 0.23 +0.1 196,702 + GFF5576 0.23 +0.6 196,703 - GFF5576 0.23 -0.4 196,703 - GFF5576 0.23 -0.5 196,703 - GFF5576 0.23 +0.2 196,703 - GFF5576 0.23 -0.1 196,703 - GFF5576 0.23 -0.5 196,703 - GFF5576 0.23 -0.5 197,094 + GFF5576 0.56 +0.5 197,095 - GFF5576 0.56 +1.8 197,095 - GFF5576 0.56 -0.1 197,095 - GFF5576 0.56 -0.6 197,095 - GFF5576 0.56 -0.1 197,263 - GFF5576 0.70 -0.1 197,263 - GFF5576 0.70 -0.1 197,299 + GFF5576 0.73 -0.1 197,355 + GFF5576 0.77 -0.6 197,356 - GFF5576 0.78 +0.7
Or see this region's nucleotide sequence