Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5509 and GFF5510 are separated by 0 nucleotides GFF5510 and GFF5511 are separated by 135 nucleotides
GFF5509 - Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 140,352 to 141,257
GFF5509
GFF5510 - protein of unknown function DUF306, Meta and HslJ, at 141,258 to 141,713
GFF5510
GFF5511 - FIG000875: Thioredoxin domain-containing protein EC-YbbN, at 141,849 to 142,769
GFF5511
Position (kb) 141
142 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.695 kb on - strand, within GFF5509 at 140.695 kb on - strand, within GFF5509 at 140.695 kb on - strand, within GFF5509 at 140.721 kb on + strand, within GFF5509 at 140.721 kb on + strand, within GFF5509 at 140.721 kb on + strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.851 kb on - strand, within GFF5509 at 140.851 kb on - strand, within GFF5509 at 140.919 kb on + strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 141.048 kb on + strand, within GFF5509 at 141.048 kb on + strand, within GFF5509 at 141.048 kb on + strand, within GFF5509 at 141.049 kb on - strand, within GFF5509 at 141.066 kb on + strand, within GFF5509 at 141.066 kb on + strand, within GFF5509 at 141.066 kb on + strand, within GFF5509 at 141.066 kb on + strand, within GFF5509 at 141.067 kb on - strand, within GFF5509 at 141.067 kb on - strand, within GFF5509 at 141.105 kb on + strand, within GFF5509 at 141.105 kb on + strand, within GFF5509 at 141.106 kb on - strand, within GFF5509 at 141.106 kb on - strand, within GFF5509 at 141.225 kb on + strand at 141.225 kb on + strand at 141.225 kb on + strand at 141.225 kb on + strand at 141.226 kb on - strand at 141.226 kb on - strand at 141.226 kb on - strand at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.884 kb on - strand at 141.884 kb on - strand at 141.884 kb on - strand at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.297 kb on + strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.298 kb on - strand, within GFF5511 at 142.627 kb on + strand, within GFF5511 at 142.627 kb on + strand, within GFF5511 at 142.628 kb on - strand, within GFF5511 at 142.628 kb on - strand, within GFF5511
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 140,421 + -1.0 140,421 + -0.8 140,421 + -0.5 140,421 + +0.0 140,421 + +0.2 140,421 + -1.8 140,421 + -0.6 140,421 + -0.8 140,421 + +0.2 140,421 + -0.6 140,422 - -0.8 140,422 - +3.2 140,422 - +0.6 140,422 - +1.2 140,422 - -0.8 140,422 - +0.6 140,422 - +0.8 140,422 - -0.9 140,422 - +0.2 140,422 - +0.4 140,422 - +1.2 140,422 - +1.2 140,422 - +0.4 140,422 - +1.2 140,695 - GFF5509 0.38 +2.2 140,695 - GFF5509 0.38 +0.6 140,695 - GFF5509 0.38 +2.2 140,721 + GFF5509 0.41 +0.4 140,721 + GFF5509 0.41 +2.2 140,721 + GFF5509 0.41 +0.2 140,722 - GFF5509 0.41 +0.8 140,722 - GFF5509 0.41 -0.1 140,722 - GFF5509 0.41 -1.0 140,722 - GFF5509 0.41 +3.2 140,722 - GFF5509 0.41 +1.0 140,850 + GFF5509 0.55 +1.2 140,850 + GFF5509 0.55 +1.2 140,850 + GFF5509 0.55 +0.9 140,850 + GFF5509 0.55 +0.6 140,850 + GFF5509 0.55 -0.4 140,850 + GFF5509 0.55 +1.2 140,851 - GFF5509 0.55 -0.1 140,851 - GFF5509 0.55 -0.1 140,919 + GFF5509 0.63 -0.1 140,920 - GFF5509 0.63 +1.2 140,920 - GFF5509 0.63 +0.1 140,920 - GFF5509 0.63 -0.4 140,920 - GFF5509 0.63 +2.2 140,920 - GFF5509 0.63 +2.2 141,048 + GFF5509 0.77 +0.6 141,048 + GFF5509 0.77 -1.2 141,048 + GFF5509 0.77 +2.2 141,049 - GFF5509 0.77 +0.6 141,066 + GFF5509 0.79 +2.2 141,066 + GFF5509 0.79 -1.0 141,066 + GFF5509 0.79 +1.2 141,066 + GFF5509 0.79 +2.2 141,067 - GFF5509 0.79 -0.6 141,067 - GFF5509 0.79 -0.1 141,105 + GFF5509 0.83 +1.2 141,105 + GFF5509 0.83 -1.0 141,106 - GFF5509 0.83 -0.4 141,106 - GFF5509 0.83 -1.5 141,225 + +0.2 141,225 + +0.6 141,225 + +0.6 141,225 + -0.6 141,226 - +0.2 141,226 - +2.2 141,226 - +1.6 141,343 + GFF5510 0.19 -0.1 141,343 + GFF5510 0.19 -0.6 141,343 + GFF5510 0.19 -0.6 141,343 + GFF5510 0.19 -1.7 141,343 + GFF5510 0.19 +0.2 141,343 + GFF5510 0.19 +1.0 141,343 + GFF5510 0.19 -0.6 141,343 + GFF5510 0.19 +0.9 141,343 + GFF5510 0.19 +0.2 141,343 + GFF5510 0.19 -0.4 141,343 + GFF5510 0.19 -0.3 141,343 + GFF5510 0.19 -0.8 141,344 - GFF5510 0.19 +1.8 141,344 - GFF5510 0.19 -0.8 141,344 - GFF5510 0.19 +1.2 141,344 - GFF5510 0.19 -2.7 141,344 - GFF5510 0.19 +0.1 141,344 - GFF5510 0.19 +1.2 141,344 - GFF5510 0.19 -0.5 141,344 - GFF5510 0.19 -0.3 141,344 - GFF5510 0.19 -1.3 141,344 - GFF5510 0.19 -0.9 141,344 - GFF5510 0.19 -0.2 141,344 - GFF5510 0.19 +1.6 141,344 - GFF5510 0.19 -1.1 141,466 + GFF5510 0.46 +1.1 141,466 + GFF5510 0.46 -0.5 141,466 + GFF5510 0.46 -0.3 141,466 + GFF5510 0.46 -2.4 141,466 + GFF5510 0.46 -0.1 141,466 + GFF5510 0.46 -1.1 141,466 + GFF5510 0.46 -0.4 141,466 + GFF5510 0.46 -1.1 141,466 + GFF5510 0.46 -0.6 141,466 + GFF5510 0.46 -0.4 141,466 + GFF5510 0.46 -0.3 141,466 + GFF5510 0.46 -0.1 141,466 + GFF5510 0.46 -0.3 141,467 - GFF5510 0.46 -0.6 141,467 - GFF5510 0.46 -0.9 141,467 - GFF5510 0.46 -0.2 141,467 - GFF5510 0.46 +0.9 141,467 - GFF5510 0.46 -0.2 141,467 - GFF5510 0.46 +0.2 141,467 - GFF5510 0.46 -0.5 141,467 - GFF5510 0.46 -0.3 141,467 - GFF5510 0.46 -0.3 141,467 - GFF5510 0.46 -0.9 141,467 - GFF5510 0.46 -0.4 141,467 - GFF5510 0.46 -1.0 141,467 - GFF5510 0.46 -1.0 141,467 - GFF5510 0.46 -0.1 141,467 - GFF5510 0.46 -0.0 141,467 - GFF5510 0.46 -0.3 141,467 - GFF5510 0.46 +0.6 141,467 - GFF5510 0.46 -1.4 141,467 - GFF5510 0.46 -0.2 141,467 - GFF5510 0.46 -0.6 141,467 - GFF5510 0.46 -0.3 141,467 - GFF5510 0.46 +0.0 141,467 - GFF5510 0.46 -1.5 141,467 - GFF5510 0.46 -0.4 141,467 - GFF5510 0.46 -1.3 141,467 - GFF5510 0.46 +0.4 141,765 + -1.1 141,765 + -0.6 141,765 + +1.7 141,765 + +0.1 141,765 + -1.2 141,765 + +0.4 141,765 + -0.7 141,765 + -1.2 141,765 + -1.1 141,765 + +0.4 141,765 + -0.4 141,765 + -0.1 141,765 + -2.7 141,765 + +0.6 141,765 + -0.3 141,765 - -1.2 141,766 - -1.8 141,766 - -1.7 141,766 - -0.6 141,766 - -0.6 141,766 - -1.4 141,766 - -0.3 141,766 - -0.2 141,766 - -0.5 141,766 - -1.1 141,766 - -0.4 141,766 - -0.3 141,766 - +0.1 141,883 + -1.0 141,883 + -0.1 141,883 + -0.7 141,883 + +0.9 141,883 + -0.1 141,883 + -0.9 141,884 - +1.5 141,884 - +0.3 141,884 - +0.2 141,970 + GFF5511 0.13 -0.3 141,970 + GFF5511 0.13 +0.1 141,970 + GFF5511 0.13 +0.7 141,970 + GFF5511 0.13 -1.1 141,970 + GFF5511 0.13 -0.2 141,970 + GFF5511 0.13 +0.1 141,970 + GFF5511 0.13 -0.7 141,970 + GFF5511 0.13 -0.4 141,970 + GFF5511 0.13 -1.0 141,970 + GFF5511 0.13 -1.4 141,971 - GFF5511 0.13 +0.6 141,971 - GFF5511 0.13 -0.5 141,971 - GFF5511 0.13 +0.6 141,971 - GFF5511 0.13 -0.6 141,971 - GFF5511 0.13 +0.1 141,971 - GFF5511 0.13 -0.3 141,971 - GFF5511 0.13 -0.2 141,971 - GFF5511 0.13 -0.5 141,971 - GFF5511 0.13 -0.1 141,971 - GFF5511 0.13 -0.9 141,971 - GFF5511 0.13 -0.2 141,971 - GFF5511 0.13 +0.5 141,971 - GFF5511 0.13 +1.1 141,971 - GFF5511 0.13 -0.5 141,971 - GFF5511 0.13 +0.1 141,971 - GFF5511 0.13 -0.2 141,971 - GFF5511 0.13 -0.9 141,971 - GFF5511 0.13 +1.0 141,971 - GFF5511 0.13 +0.6 141,971 - GFF5511 0.13 +0.5 142,297 + GFF5511 0.49 -0.9 142,297 + GFF5511 0.49 +0.1 142,297 + GFF5511 0.49 -0.2 142,297 + GFF5511 0.49 -0.1 142,297 + GFF5511 0.49 +1.6 142,297 + GFF5511 0.49 +0.1 142,297 + GFF5511 0.49 +0.6 142,297 + GFF5511 0.49 -0.2 142,297 + GFF5511 0.49 -0.4 142,297 + GFF5511 0.49 +0.5 142,297 + GFF5511 0.49 -0.1 142,297 + GFF5511 0.49 +0.1 142,297 + GFF5511 0.49 +0.2 142,298 - GFF5511 0.49 +1.0 142,298 - GFF5511 0.49 +0.4 142,298 - GFF5511 0.49 +0.0 142,298 - GFF5511 0.49 +0.7 142,298 - GFF5511 0.49 -0.4 142,298 - GFF5511 0.49 +2.2 142,298 - GFF5511 0.49 -0.6 142,298 - GFF5511 0.49 +0.6 142,298 - GFF5511 0.49 -0.6 142,298 - GFF5511 0.49 -0.6 142,298 - GFF5511 0.49 -1.1 142,627 + GFF5511 0.84 -0.1 142,627 + GFF5511 0.84 -0.3 142,628 - GFF5511 0.85 +0.2 142,628 - GFF5511 0.85 -1.4
Or see this region's nucleotide sequence