Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5263 and GFF5264 overlap by 4 nucleotides GFF5264 and GFF5265 are separated by 620 nucleotides
GFF5263 - Ferric iron ABC transporter, permease protein, at 128,991 to 131,264
GFF5263
GFF5264 - Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1), at 131,261 to 132,310
GFF5264
GFF5265 - Outer membrane lipoprotein, at 132,931 to 133,599
GFF5265
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.350 kb on + strand, within GFF5263 at 130.351 kb on - strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.464 kb on + strand, within GFF5263 at 130.464 kb on + strand, within GFF5263 at 130.465 kb on - strand, within GFF5263 at 130.512 kb on + strand, within GFF5263 at 130.513 kb on - strand, within GFF5263 at 130.513 kb on - strand, within GFF5263 at 130.513 kb on - strand, within GFF5263 at 130.767 kb on + strand, within GFF5263 at 130.767 kb on + strand, within GFF5263 at 130.767 kb on + strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 131.001 kb on + strand, within GFF5263 at 131.002 kb on - strand, within GFF5263 at 131.002 kb on - strand, within GFF5263 at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.109 kb on + strand at 131.127 kb on + strand at 131.127 kb on + strand at 131.284 kb on + strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.565 kb on - strand, within GFF5264 at 131.837 kb on + strand, within GFF5264 at 131.837 kb on + strand, within GFF5264 at 131.837 kb on + strand, within GFF5264 at 131.838 kb on - strand, within GFF5264 at 131.838 kb on - strand, within GFF5264 at 131.838 kb on - strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.937 kb on - strand, within GFF5264 at 131.937 kb on - strand, within GFF5264 at 131.937 kb on - strand, within GFF5264 at 132.161 kb on + strand, within GFF5264 at 132.162 kb on - strand, within GFF5264 at 132.176 kb on + strand, within GFF5264 at 132.177 kb on - strand, within GFF5264 at 132.182 kb on + strand, within GFF5264 at 132.182 kb on + strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.381 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.657 kb on - strand at 132.657 kb on - strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.783 kb on - strand at 132.783 kb on - strand at 132.783 kb on - strand at 132.932 kb on + strand at 132.946 kb on + strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.984 kb on - strand at 133.082 kb on + strand, within GFF5265 at 133.082 kb on + strand, within GFF5265 at 133.109 kb on + strand, within GFF5265 at 133.109 kb on + strand, within GFF5265 at 133.109 kb on + strand, within GFF5265 at 133.292 kb on + strand, within GFF5265 at 133.293 kb on - strand, within GFF5265 at 133.293 kb on - strand, within GFF5265 at 133.293 kb on - strand, within GFF5265
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 130,350 + GFF5263 0.60 -0.6 130,351 - GFF5263 0.60 -1.0 130,422 + GFF5263 0.63 -1.1 130,422 + GFF5263 0.63 -0.6 130,422 + GFF5263 0.63 +0.3 130,422 + GFF5263 0.63 +0.2 130,422 + GFF5263 0.63 -0.2 130,422 + GFF5263 0.63 -0.4 130,422 + GFF5263 0.63 -1.1 130,423 - GFF5263 0.63 -0.4 130,423 - GFF5263 0.63 -0.2 130,423 - GFF5263 0.63 -0.2 130,423 - GFF5263 0.63 -0.9 130,423 - GFF5263 0.63 -0.3 130,423 - GFF5263 0.63 +0.5 130,423 - GFF5263 0.63 -0.3 130,423 - GFF5263 0.63 -1.2 130,423 - GFF5263 0.63 +0.6 130,464 + GFF5263 0.65 -0.3 130,464 + GFF5263 0.65 -0.1 130,465 - GFF5263 0.65 -0.5 130,512 + GFF5263 0.67 +0.5 130,513 - GFF5263 0.67 +0.1 130,513 - GFF5263 0.67 -1.2 130,513 - GFF5263 0.67 +0.8 130,767 + GFF5263 0.78 -1.1 130,767 + GFF5263 0.78 -0.1 130,767 + GFF5263 0.78 -0.6 130,768 - GFF5263 0.78 -0.6 130,768 - GFF5263 0.78 -0.6 130,768 - GFF5263 0.78 +2.1 130,768 - GFF5263 0.78 -0.3 130,768 - GFF5263 0.78 -0.3 130,768 - GFF5263 0.78 -0.3 130,768 - GFF5263 0.78 -0.4 130,768 - GFF5263 0.78 -0.7 131,001 + GFF5263 0.88 -0.1 131,002 - GFF5263 0.88 +0.4 131,002 - GFF5263 0.88 +2.1 131,079 + -0.2 131,079 + +0.1 131,079 + +0.2 131,079 + -0.6 131,079 + +0.2 131,079 + -0.3 131,079 + -0.1 131,079 + +0.3 131,079 + -0.2 131,079 + +1.1 131,079 + +0.9 131,080 - +1.1 131,080 - -0.8 131,080 - -0.3 131,080 - -1.0 131,080 - +0.4 131,080 - -0.2 131,080 - -0.9 131,080 - -0.1 131,080 - -0.6 131,080 - -0.9 131,109 + -1.2 131,127 + -0.9 131,127 + -0.7 131,284 + -0.2 131,285 - -0.1 131,285 - -0.7 131,285 - -2.8 131,522 + GFF5264 0.25 -0.2 131,522 + GFF5264 0.25 -0.6 131,522 + GFF5264 0.25 -3.1 131,522 + GFF5264 0.25 +0.0 131,522 + GFF5264 0.25 +0.8 131,522 + GFF5264 0.25 +1.1 131,522 + GFF5264 0.25 -1.5 131,522 + GFF5264 0.25 -0.5 131,522 + GFF5264 0.25 +0.1 131,522 + GFF5264 0.25 +0.3 131,522 + GFF5264 0.25 -0.1 131,522 + GFF5264 0.25 +0.5 131,522 + GFF5264 0.25 +1.0 131,523 - GFF5264 0.25 -0.1 131,523 - GFF5264 0.25 -0.9 131,523 - GFF5264 0.25 -1.1 131,523 - GFF5264 0.25 +0.2 131,523 - GFF5264 0.25 -0.4 131,565 - GFF5264 0.29 -0.8 131,837 + GFF5264 0.55 +0.1 131,837 + GFF5264 0.55 -0.6 131,837 + GFF5264 0.55 -0.5 131,838 - GFF5264 0.55 -0.1 131,838 - GFF5264 0.55 -0.3 131,838 - GFF5264 0.55 -0.3 131,936 + GFF5264 0.64 +0.3 131,936 + GFF5264 0.64 +0.1 131,936 + GFF5264 0.64 -0.1 131,936 + GFF5264 0.64 +0.7 131,936 + GFF5264 0.64 -0.5 131,936 + GFF5264 0.64 -0.2 131,936 + GFF5264 0.64 +0.7 131,936 + GFF5264 0.64 -0.9 131,937 - GFF5264 0.64 -1.3 131,937 - GFF5264 0.64 -2.1 131,937 - GFF5264 0.64 -0.2 132,161 + GFF5264 0.86 +0.2 132,162 - GFF5264 0.86 +0.8 132,176 + GFF5264 0.87 -0.4 132,177 - GFF5264 0.87 -0.2 132,182 + GFF5264 0.88 +0.5 132,182 + GFF5264 0.88 +0.3 132,183 - GFF5264 0.88 -0.8 132,183 - GFF5264 0.88 -1.1 132,183 - GFF5264 0.88 -0.2 132,183 - GFF5264 0.88 -1.2 132,381 + -0.2 132,656 + -0.4 132,656 + +0.3 132,656 + -1.5 132,656 + +0.7 132,656 + -0.6 132,656 + -1.0 132,656 + -0.7 132,657 - -0.8 132,657 - +0.0 132,659 + -0.9 132,659 + -0.6 132,659 + +1.3 132,659 + -1.1 132,659 + -0.4 132,659 + +1.1 132,659 + +1.8 132,659 + -2.3 132,660 - +0.5 132,660 - -0.1 132,660 - +0.0 132,660 - -0.1 132,660 - -0.4 132,660 - -0.1 132,660 - -0.4 132,660 - -0.3 132,782 + -1.1 132,782 + -0.5 132,782 + -0.1 132,782 + -1.5 132,782 + +0.5 132,782 + +0.4 132,782 + -0.2 132,783 - -1.9 132,783 - -0.4 132,783 - -0.1 132,932 + -0.4 132,946 + +0.1 132,947 - +0.4 132,947 - +0.9 132,947 - -0.5 132,947 - +0.5 132,947 - -0.3 132,947 - -1.1 132,947 - +0.5 132,984 - -1.5 133,082 + GFF5265 0.23 -1.4 133,082 + GFF5265 0.23 -0.4 133,109 + GFF5265 0.27 +0.5 133,109 + GFF5265 0.27 +2.4 133,109 + GFF5265 0.27 -1.1 133,292 + GFF5265 0.54 -1.3 133,293 - GFF5265 0.54 +0.7 133,293 - GFF5265 0.54 -0.7 133,293 - GFF5265 0.54 +1.5
Or see this region's nucleotide sequence