Strain Fitness in Variovorax sp. SCN45 around GFF4854

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4852 and GFF4853 are separated by 25 nucleotidesGFF4853 and GFF4854 are separated by 17 nucleotidesGFF4854 and GFF4855 are separated by 0 nucleotidesGFF4855 and GFF4856 are separated by 24 nucleotides GFF4852 - Conjugative transfer protein TrbK, at 222,535 to 222,765 GFF4852 GFF4853 - Transcriptional regulator, LysR family, at 222,791 to 223,705 GFF4853 GFF4854 - Electron transfer flavoprotein, alpha subunit, at 223,723 to 224,655 GFF4854 GFF4855 - Electron transfer flavoprotein, beta subunit, at 224,656 to 225,405 GFF4855 GFF4856 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 225,430 to 227,211 GFF4856 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2 3at 222.897 kb on + strand, within GFF4853at 222.897 kb on + strand, within GFF4853at 222.897 kb on + strand, within GFF4853at 222.897 kb on + strand, within GFF4853at 222.897 kb on + strand, within GFF4853at 222.897 kb on + strand, within GFF4853at 222.897 kb on + strand, within GFF4853at 222.897 kb on + strand, within GFF4853at 222.897 kb on + strand, within GFF4853at 222.898 kb on - strand, within GFF4853at 222.898 kb on - strand, within GFF4853at 222.898 kb on - strand, within GFF4853at 222.898 kb on - strand, within GFF4853at 222.898 kb on - strand, within GFF4853at 222.898 kb on - strand, within GFF4853at 222.898 kb on - strand, within GFF4853at 222.898 kb on - strand, within GFF4853at 222.898 kb on - strand, within GFF4853at 223.010 kb on + strand, within GFF4853at 223.010 kb on + strand, within GFF4853at 223.010 kb on + strand, within GFF4853at 223.011 kb on - strand, within GFF4853at 223.011 kb on - strand, within GFF4853at 223.011 kb on - strand, within GFF4853at 223.011 kb on - strand, within GFF4853at 223.011 kb on - strand, within GFF4853at 223.029 kb on + strand, within GFF4853at 223.029 kb on + strand, within GFF4853at 223.030 kb on - strand, within GFF4853at 223.030 kb on - strand, within GFF4853at 223.030 kb on - strand, within GFF4853at 223.030 kb on - strand, within GFF4853at 223.030 kb on - strand, within GFF4853at 223.030 kb on - strand, within GFF4853at 223.030 kb on - strand, within GFF4853at 223.030 kb on - strand, within GFF4853at 223.069 kb on - strand, within GFF4853at 223.069 kb on - strand, within GFF4853at 223.112 kb on + strand, within GFF4853at 223.284 kb on + strand, within GFF4853at 223.284 kb on + strand, within GFF4853at 223.284 kb on + strand, within GFF4853at 223.284 kb on + strand, within GFF4853at 223.284 kb on + strand, within GFF4853at 223.284 kb on + strand, within GFF4853at 223.284 kb on + strand, within GFF4853at 223.284 kb on + strand, within GFF4853at 223.284 kb on + strand, within GFF4853at 223.285 kb on - strand, within GFF4853at 223.285 kb on - strand, within GFF4853at 223.285 kb on - strand, within GFF4853at 223.285 kb on - strand, within GFF4853at 223.589 kb on + strand, within GFF4853at 223.589 kb on + strand, within GFF4853at 223.589 kb on + strand, within GFF4853at 223.590 kb on - strand, within GFF4853at 223.590 kb on - strand, within GFF4853at 223.590 kb on - strand, within GFF4853at 223.676 kb on + strandat 223.677 kb on - strandat 223.677 kb on - strandat 223.678 kb on + strandat 223.679 kb on - strandat 223.679 kb on - strandat 223.679 kb on - strandat 223.679 kb on - strandat 223.679 kb on - strandat 223.710 kb on + strandat 223.710 kb on + strandat 223.710 kb on + strandat 223.710 kb on + strandat 223.710 kb on + strandat 223.710 kb on + strandat 223.710 kb on + strandat 223.710 kb on + strandat 223.710 kb on + strandat 223.711 kb on - strandat 223.711 kb on - strandat 223.711 kb on - strandat 223.711 kb on - strandat 223.711 kb on - strandat 223.711 kb on - strandat 223.711 kb on - strandat 223.711 kb on - strandat 223.711 kb on - strandat 223.778 kb on + strandat 223.892 kb on + strand, within GFF4854at 223.892 kb on + strand, within GFF4854at 223.893 kb on - strand, within GFF4854at 223.893 kb on - strand, within GFF4854at 223.893 kb on - strand, within GFF4854at 223.893 kb on - strand, within GFF4854at 223.893 kb on - strand, within GFF4854at 223.893 kb on - strand, within GFF4854at 223.893 kb on - strand, within GFF4854at 224.123 kb on + strand, within GFF4854at 224.123 kb on + strand, within GFF4854at 224.123 kb on + strand, within GFF4854at 224.123 kb on + strand, within GFF4854at 224.123 kb on + strand, within GFF4854at 224.124 kb on - strand, within GFF4854at 224.124 kb on - strand, within GFF4854at 224.124 kb on - strand, within GFF4854at 224.124 kb on - strand, within GFF4854at 224.124 kb on - strand, within GFF4854at 224.273 kb on + strand, within GFF4854at 224.273 kb on + strand, within GFF4854at 224.273 kb on + strand, within GFF4854at 224.273 kb on + strand, within GFF4854at 224.274 kb on - strand, within GFF4854at 224.274 kb on - strand, within GFF4854at 224.274 kb on - strand, within GFF4854at 224.403 kb on + strand, within GFF4854at 224.403 kb on + strand, within GFF4854at 224.403 kb on + strand, within GFF4854at 224.404 kb on - strand, within GFF4854at 224.404 kb on - strand, within GFF4854at 224.404 kb on - strand, within GFF4854at 224.404 kb on - strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.405 kb on + strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.406 kb on - strand, within GFF4854at 224.647 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.657 kb on + strandat 224.658 kb on - strandat 224.658 kb on - strandat 224.852 kb on + strand, within GFF4855at 224.852 kb on + strand, within GFF4855at 224.852 kb on + strand, within GFF4855at 224.853 kb on - strand, within GFF4855at 224.853 kb on - strand, within GFF4855at 225.102 kb on + strand, within GFF4855at 225.102 kb on + strand, within GFF4855at 225.103 kb on - strand, within GFF4855at 225.111 kb on + strand, within GFF4855at 225.151 kb on + strand, within GFF4855at 225.151 kb on + strand, within GFF4855at 225.368 kb on + strandat 225.368 kb on + strandat 225.368 kb on + strandat 225.368 kb on + strandat 225.368 kb on + strandat 225.369 kb on - strandat 225.549 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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222,897 + GFF4853 0.12 -1.2
222,897 + GFF4853 0.12 -0.7
222,897 + GFF4853 0.12 +0.7
222,897 + GFF4853 0.12 -0.7
222,897 + GFF4853 0.12 -1.1
222,897 + GFF4853 0.12 +0.3
222,897 + GFF4853 0.12 +0.5
222,897 + GFF4853 0.12 -0.4
222,897 + GFF4853 0.12 +0.9
222,898 - GFF4853 0.12 +0.8
222,898 - GFF4853 0.12 +0.6
222,898 - GFF4853 0.12 -0.9
222,898 - GFF4853 0.12 -0.5
222,898 - GFF4853 0.12 -0.0
222,898 - GFF4853 0.12 -0.2
222,898 - GFF4853 0.12 +0.1
222,898 - GFF4853 0.12 -1.7
222,898 - GFF4853 0.12 -1.4
223,010 + GFF4853 0.24 -1.0
223,010 + GFF4853 0.24 -1.2
223,010 + GFF4853 0.24 +0.2
223,011 - GFF4853 0.24 +0.6
223,011 - GFF4853 0.24 -0.2
223,011 - GFF4853 0.24 -1.6
223,011 - GFF4853 0.24 +0.2
223,011 - GFF4853 0.24 -1.3
223,029 + GFF4853 0.26 -0.5
223,029 + GFF4853 0.26 -0.3
223,030 - GFF4853 0.26 +0.2
223,030 - GFF4853 0.26 -0.1
223,030 - GFF4853 0.26 -0.2
223,030 - GFF4853 0.26 -0.8
223,030 - GFF4853 0.26 -1.1
223,030 - GFF4853 0.26 -1.5
223,030 - GFF4853 0.26 -0.8
223,030 - GFF4853 0.26 -1.0
223,069 - GFF4853 0.30 +1.4
223,069 - GFF4853 0.30 -1.0
223,112 + GFF4853 0.35 -0.1
223,284 + GFF4853 0.54 +0.6
223,284 + GFF4853 0.54 -0.0
223,284 + GFF4853 0.54 -0.4
223,284 + GFF4853 0.54 +0.2
223,284 + GFF4853 0.54 -0.1
223,284 + GFF4853 0.54 -1.0
223,284 + GFF4853 0.54 +0.8
223,284 + GFF4853 0.54 -0.2
223,284 + GFF4853 0.54 -0.5
223,285 - GFF4853 0.54 -1.2
223,285 - GFF4853 0.54 -0.8
223,285 - GFF4853 0.54 -1.0
223,285 - GFF4853 0.54 -1.0
223,589 + GFF4853 0.87 +0.2
223,589 + GFF4853 0.87 +0.2
223,589 + GFF4853 0.87 +1.4
223,590 - GFF4853 0.87 +0.2
223,590 - GFF4853 0.87 -0.1
223,590 - GFF4853 0.87 -0.0
223,676 + +0.0
223,677 - +0.9
223,677 - +0.4
223,678 + -0.4
223,679 - -0.9
223,679 - -0.2
223,679 - +0.1
223,679 - +0.2
223,679 - -0.4
223,710 + +1.2
223,710 + -0.1
223,710 + -0.8
223,710 + -0.2
223,710 + +0.3
223,710 + -2.0
223,710 + -0.9
223,710 + -0.2
223,710 + -0.7
223,711 - +0.9
223,711 - -1.2
223,711 - -0.4
223,711 - +3.3
223,711 - +0.1
223,711 - -0.6
223,711 - -0.1
223,711 - +0.8
223,711 - -1.2
223,778 + -0.2
223,892 + GFF4854 0.18 +0.5
223,892 + GFF4854 0.18 -0.2
223,893 - GFF4854 0.18 -0.2
223,893 - GFF4854 0.18 -0.2
223,893 - GFF4854 0.18 -0.6
223,893 - GFF4854 0.18 +3.3
223,893 - GFF4854 0.18 -0.9
223,893 - GFF4854 0.18 +0.4
223,893 - GFF4854 0.18 -0.0
224,123 + GFF4854 0.43 +0.7
224,123 + GFF4854 0.43 -1.8
224,123 + GFF4854 0.43 -0.0
224,123 + GFF4854 0.43 -0.4
224,123 + GFF4854 0.43 -0.3
224,124 - GFF4854 0.43 +0.1
224,124 - GFF4854 0.43 -0.4
224,124 - GFF4854 0.43 +0.2
224,124 - GFF4854 0.43 -0.0
224,124 - GFF4854 0.43 +0.2
224,273 + GFF4854 0.59 -0.5
224,273 + GFF4854 0.59 -0.0
224,273 + GFF4854 0.59 +0.1
224,273 + GFF4854 0.59 +1.8
224,274 - GFF4854 0.59 +0.1
224,274 - GFF4854 0.59 -1.3
224,274 - GFF4854 0.59 -0.7
224,403 + GFF4854 0.73 +1.0
224,403 + GFF4854 0.73 +0.7
224,403 + GFF4854 0.73 -0.6
224,404 - GFF4854 0.73 -0.2
224,404 - GFF4854 0.73 -0.4
224,404 - GFF4854 0.73 +0.2
224,404 - GFF4854 0.73 +1.8
224,405 + GFF4854 0.73 -0.2
224,405 + GFF4854 0.73 +1.5
224,405 + GFF4854 0.73 +0.2
224,405 + GFF4854 0.73 +0.3
224,405 + GFF4854 0.73 +1.5
224,405 + GFF4854 0.73 -0.4
224,405 + GFF4854 0.73 +0.2
224,405 + GFF4854 0.73 -2.0
224,405 + GFF4854 0.73 -0.2
224,405 + GFF4854 0.73 +3.4
224,405 + GFF4854 0.73 -0.3
224,405 + GFF4854 0.73 -0.1
224,405 + GFF4854 0.73 +0.5
224,405 + GFF4854 0.73 -1.7
224,405 + GFF4854 0.73 -0.2
224,405 + GFF4854 0.73 +1.8
224,405 + GFF4854 0.73 +0.6
224,405 + GFF4854 0.73 -0.9
224,405 + GFF4854 0.73 +0.2
224,406 - GFF4854 0.73 -1.5
224,406 - GFF4854 0.73 -1.4
224,406 - GFF4854 0.73 -0.4
224,406 - GFF4854 0.73 -0.6
224,406 - GFF4854 0.73 +1.0
224,406 - GFF4854 0.73 +0.7
224,406 - GFF4854 0.73 +0.0
224,406 - GFF4854 0.73 -0.1
224,406 - GFF4854 0.73 +0.3
224,406 - GFF4854 0.73 +0.1
224,406 - GFF4854 0.73 -0.7
224,647 + -0.5
224,657 + -1.4
224,657 + -0.7
224,657 + +0.2
224,657 + -0.6
224,657 + +1.2
224,657 + -0.6
224,657 + -0.3
224,658 - -2.2
224,658 - -0.3
224,852 + GFF4855 0.26 -1.7
224,852 + GFF4855 0.26 -0.8
224,852 + GFF4855 0.26 +0.4
224,853 - GFF4855 0.26 +0.2
224,853 - GFF4855 0.26 +0.8
225,102 + GFF4855 0.59 -0.0
225,102 + GFF4855 0.59 +0.8
225,103 - GFF4855 0.60 -1.6
225,111 + GFF4855 0.61 -2.1
225,151 + GFF4855 0.66 -1.2
225,151 + GFF4855 0.66 -0.6
225,368 + +0.3
225,368 + -1.1
225,368 + -1.4
225,368 + +0.4
225,368 + -1.8
225,369 - -0.8
225,549 + -0.4

Or see this region's nucleotide sequence