Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF477 and GFF478 are separated by 119 nucleotides GFF478 and GFF479 are separated by 51 nucleotides GFF479 and GFF480 are separated by 502 nucleotides
GFF477 - Transcriptional regulator, LysR family, at 514,907 to 515,806
GFF477
GFF478 - Rrf2-linked NADH-flavin reductase, at 515,926 to 516,543
GFF478
GFF479 - Fumarate hydratase class II (EC 4.2.1.2), at 516,595 to 517,992
GFF479
GFF480 - Glycine betaine/L-proline transport ATP-binding protein ProV (TC 3.A.1.12.1), at 518,495 to 519,751
GFF480
Position (kb) 516
517
518 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 515.718 kb on + strand at 515.718 kb on + strand at 515.718 kb on + strand at 515.719 kb on - strand at 515.719 kb on - strand at 515.887 kb on + strand at 515.887 kb on + strand at 515.887 kb on + strand at 515.887 kb on + strand at 515.888 kb on - strand at 515.888 kb on - strand at 515.888 kb on - strand at 515.888 kb on - strand at 515.888 kb on - strand at 516.433 kb on + strand, within GFF478 at 516.435 kb on - strand, within GFF478 at 516.473 kb on - strand, within GFF478 at 516.526 kb on + strand at 516.526 kb on + strand at 516.526 kb on + strand at 516.526 kb on + strand at 516.527 kb on - strand at 516.716 kb on + strand at 516.716 kb on + strand at 516.716 kb on + strand at 516.716 kb on + strand at 516.716 kb on + strand at 516.717 kb on - strand at 516.717 kb on - strand at 516.717 kb on - strand at 516.717 kb on - strand at 516.731 kb on + strand at 517.373 kb on + strand, within GFF479 at 517.373 kb on + strand, within GFF479 at 517.374 kb on - strand, within GFF479 at 517.374 kb on - strand, within GFF479 at 518.085 kb on + strand at 518.085 kb on + strand at 518.085 kb on + strand at 518.085 kb on + strand at 518.085 kb on + strand at 518.086 kb on - strand at 518.086 kb on - strand at 518.086 kb on - strand at 518.086 kb on - strand at 518.110 kb on + strand at 518.110 kb on + strand at 518.110 kb on + strand at 518.110 kb on + strand at 518.110 kb on + strand at 518.110 kb on + strand at 518.110 kb on + strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.111 kb on - strand at 518.209 kb on + strand at 518.210 kb on - strand at 518.478 kb on + strand at 518.494 kb on + strand at 518.494 kb on + strand at 518.494 kb on + strand at 518.494 kb on + strand at 518.494 kb on + strand at 518.494 kb on + strand at 518.494 kb on + strand at 518.494 kb on + strand at 518.494 kb on + strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.495 kb on - strand at 518.975 kb on + strand, within GFF480 at 518.975 kb on + strand, within GFF480 at 518.975 kb on + strand, within GFF480 at 518.975 kb on + strand, within GFF480
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 515,718 + +1.1 515,718 + +0.6 515,718 + +1.6 515,719 - -1.3 515,719 - +0.6 515,887 + +1.0 515,887 + +0.1 515,887 + +1.0 515,887 + +0.1 515,888 - -0.1 515,888 - -0.0 515,888 - +0.1 515,888 - +0.2 515,888 - -1.0 516,433 + GFF478 0.82 +0.1 516,435 - GFF478 0.82 -0.3 516,473 - GFF478 0.89 -1.4 516,526 + +1.0 516,526 + -1.0 516,526 + +0.2 516,526 + +0.1 516,527 - +0.0 516,716 + -0.3 516,716 + -0.7 516,716 + +0.6 516,716 + -1.0 516,716 + -0.4 516,717 - -1.0 516,717 - +0.1 516,717 - -1.8 516,717 - -1.3 516,731 + -0.7 517,373 + GFF479 0.56 -0.6 517,373 + GFF479 0.56 -0.7 517,374 - GFF479 0.56 +0.3 517,374 - GFF479 0.56 -0.4 518,085 + -1.9 518,085 + -0.4 518,085 + -0.1 518,085 + +0.6 518,085 + -0.8 518,086 - -0.3 518,086 - +0.5 518,086 - +1.6 518,086 - -0.9 518,110 + -0.7 518,110 + +0.0 518,110 + -0.0 518,110 + -0.3 518,110 + -0.3 518,110 + -0.5 518,110 + -0.0 518,111 - +0.1 518,111 - -0.7 518,111 - -1.1 518,111 - -0.3 518,111 - +1.7 518,111 - -0.2 518,111 - -0.8 518,111 - -0.5 518,111 - -0.5 518,111 - -0.7 518,111 - -0.2 518,111 - -0.2 518,111 - +0.1 518,111 - +0.5 518,111 - -0.5 518,209 + -1.5 518,210 - -0.4 518,478 + -0.9 518,494 + +1.1 518,494 + +0.1 518,494 + -0.8 518,494 + +0.1 518,494 + -1.9 518,494 + +0.7 518,494 + +0.7 518,494 + -0.1 518,494 + -0.6 518,495 - -0.5 518,495 - +0.1 518,495 - +0.8 518,495 - -0.5 518,495 - -3.1 518,495 - -0.4 518,495 - -1.2 518,495 - +0.8 518,495 - +0.8 518,495 - -0.5 518,495 - -1.2 518,975 + GFF480 0.38 -0.1 518,975 + GFF480 0.38 +0.6 518,975 + GFF480 0.38 -1.4 518,975 + GFF480 0.38 -0.4
Or see this region's nucleotide sequence