Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4659 and GFF4660 are separated by 0 nucleotides GFF4660 and GFF4661 overlap by 32 nucleotides GFF4661 and GFF4662 are separated by 651 nucleotides GFF4662 and GFF4663 are separated by 106 nucleotides
GFF4659 - no description, at 17,567 to 17,686
GFF4659
GFF4660 - hypothetical protein, at 17,687 to 18,610
GFF4660
GFF4661 - no description, at 18,579 to 19,871
GFF4661
GFF4662 - no description, at 20,523 to 20,741
GFF4662
GFF4663 - no description, at 20,848 to 20,976
GFF4663
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.712 kb on + strand at 17.713 kb on - strand at 17.900 kb on + strand, within GFF4660 at 17.900 kb on + strand, within GFF4660 at 17.900 kb on + strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.351 kb on - strand, within GFF4660 at 18.351 kb on - strand, within GFF4660 at 18.563 kb on + strand at 18.563 kb on + strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.678 kb on + strand at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.055 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.154 kb on - strand, within GFF4661 at 19.154 kb on - strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.304 kb on + strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.633 kb on + strand, within GFF4661 at 19.633 kb on + strand, within GFF4661 at 19.633 kb on + strand, within GFF4661 at 19.633 kb on + strand, within GFF4661 at 19.634 kb on - strand, within GFF4661 at 19.634 kb on - strand, within GFF4661 at 19.634 kb on - strand, within GFF4661 at 19.634 kb on - strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.717 kb on - strand, within GFF4661 at 19.745 kb on - strand at 19.745 kb on - strand at 19.757 kb on + strand at 19.758 kb on - strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.823 kb on - strand at 19.823 kb on - strand at 19.823 kb on - strand at 19.823 kb on - strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.852 kb on - strand at 19.852 kb on - strand at 19.865 kb on - strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.987 kb on - strand at 19.987 kb on - strand at 19.987 kb on - strand at 20.162 kb on + strand at 20.162 kb on + strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.437 kb on - strand at 20.437 kb on - strand at 20.437 kb on - strand at 20.474 kb on + strand at 20.475 kb on - strand at 20.475 kb on - strand at 20.475 kb on - strand at 20.620 kb on - strand, within GFF4662 at 20.620 kb on - strand, within GFF4662 at 20.739 kb on + strand at 20.739 kb on + strand at 20.740 kb on - strand at 20.740 kb on - strand at 20.740 kb on - strand at 20.743 kb on + strand at 20.743 kb on + strand at 20.743 kb on + strand at 20.743 kb on + strand at 20.744 kb on - strand at 20.744 kb on - strand at 20.744 kb on - strand at 20.744 kb on - strand at 20.744 kb on - strand at 20.799 kb on + strand at 20.799 kb on + strand at 20.799 kb on + strand at 20.799 kb on + strand at 20.799 kb on + strand at 20.800 kb on - strand at 20.800 kb on - strand at 20.800 kb on - strand at 20.800 kb on - strand at 20.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,649 + GFF4659 0.68 -0.9 17,649 + GFF4659 0.68 -0.9 17,649 + GFF4659 0.68 -0.4 17,649 + GFF4659 0.68 -1.1 17,649 + GFF4659 0.68 -0.8 17,650 - GFF4659 0.69 -0.5 17,650 - GFF4659 0.69 -0.2 17,650 - GFF4659 0.69 -0.3 17,650 - GFF4659 0.69 -0.2 17,712 + -0.3 17,713 - -0.7 17,900 + GFF4660 0.23 -1.2 17,900 + GFF4660 0.23 -0.6 17,900 + GFF4660 0.23 -0.5 17,901 - GFF4660 0.23 -1.0 17,901 - GFF4660 0.23 -0.9 17,901 - GFF4660 0.23 -0.1 17,961 + GFF4660 0.30 -0.3 17,961 + GFF4660 0.30 -3.4 17,961 + GFF4660 0.30 -0.6 17,961 + GFF4660 0.30 -0.2 17,961 + GFF4660 0.30 -0.8 17,961 + GFF4660 0.30 +0.2 17,961 + GFF4660 0.30 +0.9 17,961 + GFF4660 0.30 -0.2 17,962 - GFF4660 0.30 -0.0 17,962 - GFF4660 0.30 -0.7 17,962 - GFF4660 0.30 -0.4 17,962 - GFF4660 0.30 -1.2 17,962 - GFF4660 0.30 -1.7 17,962 - GFF4660 0.30 +0.0 17,962 - GFF4660 0.30 -0.5 18,002 + GFF4660 0.34 +0.6 18,002 + GFF4660 0.34 -1.2 18,002 + GFF4660 0.34 -0.1 18,003 - GFF4660 0.34 +0.3 18,003 - GFF4660 0.34 +0.3 18,003 - GFF4660 0.34 +0.2 18,003 - GFF4660 0.34 +0.2 18,003 - GFF4660 0.34 -0.5 18,003 - GFF4660 0.34 +0.2 18,320 + GFF4660 0.69 +2.4 18,320 + GFF4660 0.69 -0.3 18,320 + GFF4660 0.69 -0.5 18,320 + GFF4660 0.69 -1.2 18,321 - GFF4660 0.69 -0.3 18,321 - GFF4660 0.69 -0.2 18,321 - GFF4660 0.69 -0.1 18,321 - GFF4660 0.69 +0.2 18,321 - GFF4660 0.69 -1.4 18,350 + GFF4660 0.72 +0.3 18,350 + GFF4660 0.72 +0.1 18,350 + GFF4660 0.72 +0.7 18,351 - GFF4660 0.72 -0.5 18,351 - GFF4660 0.72 -0.3 18,563 + -0.5 18,563 + -0.3 18,564 - -0.4 18,564 - -0.1 18,564 - -0.3 18,564 - -0.1 18,564 - -0.4 18,564 - -2.0 18,564 - -1.2 18,564 - +0.1 18,564 - +0.3 18,564 - -1.1 18,564 - -1.6 18,678 + -0.5 18,975 + GFF4661 0.31 +0.8 18,975 + GFF4661 0.31 -0.4 18,975 + GFF4661 0.31 +0.3 18,975 + GFF4661 0.31 +0.0 18,975 + GFF4661 0.31 -1.1 18,976 - GFF4661 0.31 +0.3 18,976 - GFF4661 0.31 -0.0 18,976 - GFF4661 0.31 -0.1 18,976 - GFF4661 0.31 +1.0 18,976 - GFF4661 0.31 -2.3 19,009 + GFF4661 0.33 -0.4 19,009 + GFF4661 0.33 +0.0 19,009 + GFF4661 0.33 -0.7 19,009 + GFF4661 0.33 +1.8 19,009 + GFF4661 0.33 +1.2 19,010 - GFF4661 0.33 -0.4 19,010 - GFF4661 0.33 -0.3 19,010 - GFF4661 0.33 +1.0 19,055 + GFF4661 0.37 -0.6 19,138 + GFF4661 0.43 -0.5 19,138 + GFF4661 0.43 -0.1 19,138 + GFF4661 0.43 -0.6 19,138 + GFF4661 0.43 +0.5 19,139 - GFF4661 0.43 -0.2 19,139 - GFF4661 0.43 -0.5 19,139 - GFF4661 0.43 -0.5 19,139 - GFF4661 0.43 +0.2 19,139 - GFF4661 0.43 +0.2 19,153 + GFF4661 0.44 -1.0 19,153 + GFF4661 0.44 +0.5 19,153 + GFF4661 0.44 -2.4 19,154 - GFF4661 0.44 -0.3 19,154 - GFF4661 0.44 +0.1 19,164 + GFF4661 0.45 -0.0 19,164 + GFF4661 0.45 +0.5 19,164 + GFF4661 0.45 -0.5 19,164 + GFF4661 0.45 -0.3 19,165 - GFF4661 0.45 -0.2 19,165 - GFF4661 0.45 +0.8 19,165 - GFF4661 0.45 -0.2 19,304 + GFF4661 0.56 +0.9 19,305 - GFF4661 0.56 -0.2 19,305 - GFF4661 0.56 -0.8 19,305 - GFF4661 0.56 -0.2 19,325 - GFF4661 0.58 +0.4 19,325 - GFF4661 0.58 -0.2 19,325 - GFF4661 0.58 -1.3 19,470 + GFF4661 0.69 +1.0 19,470 + GFF4661 0.69 -0.6 19,470 + GFF4661 0.69 -0.0 19,470 + GFF4661 0.69 +0.8 19,471 - GFF4661 0.69 -1.6 19,471 - GFF4661 0.69 +0.1 19,471 - GFF4661 0.69 -0.3 19,471 - GFF4661 0.69 -0.8 19,506 + GFF4661 0.72 +0.3 19,506 + GFF4661 0.72 +0.4 19,506 + GFF4661 0.72 +0.5 19,506 + GFF4661 0.72 -0.2 19,633 + GFF4661 0.82 -0.7 19,633 + GFF4661 0.82 +0.2 19,633 + GFF4661 0.82 +0.0 19,633 + GFF4661 0.82 -0.7 19,634 - GFF4661 0.82 -0.1 19,634 - GFF4661 0.82 -0.6 19,634 - GFF4661 0.82 -0.0 19,634 - GFF4661 0.82 -1.0 19,643 + GFF4661 0.82 +0.4 19,643 + GFF4661 0.82 +0.8 19,643 + GFF4661 0.82 -0.6 19,643 + GFF4661 0.82 +1.6 19,643 + GFF4661 0.82 -0.6 19,643 + GFF4661 0.82 -0.6 19,644 - GFF4661 0.82 -0.5 19,644 - GFF4661 0.82 +1.2 19,644 - GFF4661 0.82 +0.4 19,644 - GFF4661 0.82 -0.5 19,644 - GFF4661 0.82 -0.2 19,650 + GFF4661 0.83 +0.8 19,650 + GFF4661 0.83 -0.4 19,650 + GFF4661 0.83 +0.6 19,650 + GFF4661 0.83 -0.5 19,650 + GFF4661 0.83 +0.5 19,650 + GFF4661 0.83 -0.5 19,651 - GFF4661 0.83 -0.1 19,651 - GFF4661 0.83 -0.1 19,651 - GFF4661 0.83 -0.1 19,651 - GFF4661 0.83 -0.1 19,651 - GFF4661 0.83 -0.2 19,651 - GFF4661 0.83 +0.0 19,717 - GFF4661 0.88 +0.8 19,745 - +1.2 19,745 - -0.3 19,757 + -1.0 19,758 - -0.0 19,822 + -1.4 19,822 + +0.2 19,822 + -0.1 19,822 + +0.2 19,822 + -0.0 19,823 - -1.5 19,823 - -1.8 19,823 - +2.8 19,823 - -1.2 19,851 + -0.2 19,851 + +0.5 19,851 + +0.1 19,851 + -0.2 19,851 + -0.4 19,851 + +0.3 19,852 - -0.2 19,852 - -0.0 19,865 - +1.0 19,986 + -0.4 19,986 + -0.2 19,986 + -1.1 19,986 + +0.4 19,987 - +1.0 19,987 - -0.9 19,987 - +0.4 20,162 + +0.8 20,162 + -0.2 20,163 - -0.4 20,163 - +1.2 20,163 - -0.1 20,163 - +0.0 20,163 - -1.9 20,163 - -0.2 20,222 + -0.6 20,222 + +0.9 20,222 + -0.0 20,222 + +0.8 20,222 + -0.5 20,222 + +0.2 20,222 + +0.4 20,223 - -0.6 20,223 - -0.0 20,223 - -0.2 20,437 - -1.1 20,437 - -0.8 20,437 - +1.5 20,474 + +0.5 20,475 - +0.4 20,475 - -0.6 20,475 - -0.3 20,620 - GFF4662 0.44 -0.0 20,620 - GFF4662 0.44 +1.0 20,739 + -0.1 20,739 + +0.1 20,740 - -1.0 20,740 - +0.8 20,740 - -0.2 20,743 + -0.6 20,743 + +0.1 20,743 + -0.8 20,743 + -0.8 20,744 - -0.1 20,744 - -0.4 20,744 - -0.7 20,744 - -0.6 20,744 - +0.0 20,799 + -0.2 20,799 + +0.2 20,799 + +0.4 20,799 + -0.1 20,799 + -0.0 20,800 - +0.2 20,800 - -0.4 20,800 - -1.2 20,800 - +0.1 20,800 - -0.6
Or see this region's nucleotide sequence