Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4617 and GFF4618 are separated by 110 nucleotides GFF4618 and GFF4619 are separated by 34 nucleotides GFF4619 and GFF4620 are separated by 26 nucleotides GFF4620 and GFF4621 are separated by 3 nucleotides
GFF4617 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 258,933 to 259,667
GFF4617
GFF4618 - Hexuronate utilization operon transcriptional repressor ExuR, at 259,778 to 260,485
GFF4618
GFF4619 - Altronate dehydratase (EC 4.2.1.7), at 260,520 to 262,058
GFF4619
GFF4620 - Gluconolactonase (EC 3.1.1.17), at 262,085 to 263,017
GFF4620
GFF4621 - Hydroxycarboxylate dehydrogenase (NADP+) HcxB, at 263,021 to 264,076
GFF4621
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 259.534 kb on + strand, within GFF4617 at 259.535 kb on - strand, within GFF4617 at 259.711 kb on - strand at 259.711 kb on - strand at 259.715 kb on + strand at 259.715 kb on + strand at 259.715 kb on - strand at 259.716 kb on - strand at 259.716 kb on - strand at 259.716 kb on - strand at 259.732 kb on - strand at 259.974 kb on + strand, within GFF4618 at 259.974 kb on + strand, within GFF4618 at 259.975 kb on - strand, within GFF4618 at 259.994 kb on + strand, within GFF4618 at 259.995 kb on - strand, within GFF4618 at 259.995 kb on - strand, within GFF4618 at 259.995 kb on - strand, within GFF4618 at 260.316 kb on - strand, within GFF4618 at 260.319 kb on - strand, within GFF4618 at 260.319 kb on - strand, within GFF4618 at 260.529 kb on + strand at 260.530 kb on - strand at 260.530 kb on - strand at 260.682 kb on + strand, within GFF4619 at 260.683 kb on - strand, within GFF4619 at 260.683 kb on - strand, within GFF4619 at 260.777 kb on + strand, within GFF4619 at 260.895 kb on + strand, within GFF4619 at 260.895 kb on + strand, within GFF4619 at 260.895 kb on + strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 261.096 kb on + strand, within GFF4619 at 261.096 kb on + strand, within GFF4619 at 261.462 kb on + strand, within GFF4619 at 261.462 kb on + strand, within GFF4619 at 261.463 kb on - strand, within GFF4619 at 261.549 kb on + strand, within GFF4619 at 261.549 kb on + strand, within GFF4619 at 261.550 kb on - strand, within GFF4619 at 261.550 kb on - strand, within GFF4619 at 261.681 kb on + strand, within GFF4619 at 261.681 kb on + strand, within GFF4619 at 261.682 kb on - strand, within GFF4619 at 261.682 kb on - strand, within GFF4619 at 261.682 kb on - strand, within GFF4619 at 261.682 kb on - strand, within GFF4619 at 261.687 kb on + strand, within GFF4619 at 261.687 kb on + strand, within GFF4619 at 261.688 kb on - strand, within GFF4619 at 261.688 kb on - strand, within GFF4619 at 261.720 kb on + strand, within GFF4619 at 261.720 kb on + strand, within GFF4619 at 261.720 kb on + strand, within GFF4619 at 261.720 kb on + strand, within GFF4619 at 261.721 kb on - strand, within GFF4619 at 261.738 kb on + strand, within GFF4619 at 261.816 kb on + strand, within GFF4619 at 261.817 kb on - strand, within GFF4619 at 262.056 kb on + strand at 262.056 kb on + strand at 262.056 kb on + strand at 262.056 kb on + strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.057 kb on - strand at 262.342 kb on + strand, within GFF4620 at 262.343 kb on - strand, within GFF4620 at 262.343 kb on - strand, within GFF4620 at 262.520 kb on + strand, within GFF4620 at 262.539 kb on - strand, within GFF4620 at 262.583 kb on + strand, within GFF4620 at 262.611 kb on + strand, within GFF4620 at 262.611 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.679 kb on + strand, within GFF4620 at 262.680 kb on - strand, within GFF4620 at 262.680 kb on - strand, within GFF4620 at 262.871 kb on + strand, within GFF4620 at 262.872 kb on - strand, within GFF4620 at 262.872 kb on - strand, within GFF4620 at 262.985 kb on + strand at 262.986 kb on - strand at 262.986 kb on - strand at 262.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 259,534 + GFF4617 0.82 -1.1 259,535 - GFF4617 0.82 +1.6 259,711 - -0.2 259,711 - +0.6 259,715 + -0.5 259,715 + -0.1 259,715 - -0.6 259,716 - -0.2 259,716 - -1.8 259,716 - +0.8 259,732 - +0.4 259,974 + GFF4618 0.28 -1.5 259,974 + GFF4618 0.28 -0.2 259,975 - GFF4618 0.28 +0.7 259,994 + GFF4618 0.31 -0.5 259,995 - GFF4618 0.31 -1.4 259,995 - GFF4618 0.31 -1.4 259,995 - GFF4618 0.31 -1.5 260,316 - GFF4618 0.76 -1.2 260,319 - GFF4618 0.76 +0.3 260,319 - GFF4618 0.76 -0.1 260,529 + +0.7 260,530 - -0.7 260,530 - +0.6 260,682 + GFF4619 0.11 -0.1 260,683 - GFF4619 0.11 +0.8 260,683 - GFF4619 0.11 -0.3 260,777 + GFF4619 0.17 -0.6 260,895 + GFF4619 0.24 -1.2 260,895 + GFF4619 0.24 -0.7 260,895 + GFF4619 0.24 -1.4 260,896 - GFF4619 0.24 -0.0 260,896 - GFF4619 0.24 +0.5 260,896 - GFF4619 0.24 +0.2 260,896 - GFF4619 0.24 -0.2 260,896 - GFF4619 0.24 -0.5 260,896 - GFF4619 0.24 -0.0 261,096 + GFF4619 0.37 +0.4 261,096 + GFF4619 0.37 -0.3 261,462 + GFF4619 0.61 +3.9 261,462 + GFF4619 0.61 -0.4 261,463 - GFF4619 0.61 -0.2 261,549 + GFF4619 0.67 +0.5 261,549 + GFF4619 0.67 -0.0 261,550 - GFF4619 0.67 +0.8 261,550 - GFF4619 0.67 -1.9 261,681 + GFF4619 0.75 -0.4 261,681 + GFF4619 0.75 -1.1 261,682 - GFF4619 0.76 +0.1 261,682 - GFF4619 0.76 -0.4 261,682 - GFF4619 0.76 +0.6 261,682 - GFF4619 0.76 -1.9 261,687 + GFF4619 0.76 +0.1 261,687 + GFF4619 0.76 -0.3 261,688 - GFF4619 0.76 +0.1 261,688 - GFF4619 0.76 +1.4 261,720 + GFF4619 0.78 -1.1 261,720 + GFF4619 0.78 -3.2 261,720 + GFF4619 0.78 -0.5 261,720 + GFF4619 0.78 +1.2 261,721 - GFF4619 0.78 +0.2 261,738 + GFF4619 0.79 -0.3 261,816 + GFF4619 0.84 +0.5 261,817 - GFF4619 0.84 -0.7 262,056 + +0.7 262,056 + -0.8 262,056 + -0.1 262,056 + -0.7 262,057 - -0.3 262,057 - -0.2 262,057 - +0.1 262,057 - -0.1 262,057 - +0.2 262,057 - -0.1 262,057 - +0.3 262,057 - -0.7 262,057 - -0.3 262,057 - -0.1 262,342 + GFF4620 0.28 -0.7 262,343 - GFF4620 0.28 -0.0 262,343 - GFF4620 0.28 -0.6 262,520 + GFF4620 0.47 -0.7 262,539 - GFF4620 0.49 +0.2 262,583 + GFF4620 0.53 -0.0 262,611 + GFF4620 0.56 -0.0 262,611 + GFF4620 0.56 -0.2 262,679 + GFF4620 0.64 +3.2 262,679 + GFF4620 0.64 +0.2 262,679 + GFF4620 0.64 +1.3 262,679 + GFF4620 0.64 -0.4 262,679 + GFF4620 0.64 -1.0 262,680 - GFF4620 0.64 -0.2 262,680 - GFF4620 0.64 -0.0 262,871 + GFF4620 0.84 +0.6 262,872 - GFF4620 0.84 -0.2 262,872 - GFF4620 0.84 +0.0 262,985 + -0.8 262,986 - -1.7 262,986 - +0.6 262,986 - +0.1
Or see this region's nucleotide sequence