Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4574 and GFF4575 are separated by 55 nucleotides GFF4575 and GFF4576 are separated by 35 nucleotides
GFF4574 - BUG/TctC family periplasmic protein, at 212,385 to 213,377
GFF4574
GFF4575 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 213,433 to 215,385
GFF4575
GFF4576 - BUG/TctC family periplasmic protein, at 215,421 to 216,422
GFF4576
Position (kb) 213
214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 212.661 kb on + strand, within GFF4574 at 212.763 kb on + strand, within GFF4574 at 212.763 kb on + strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 213.268 kb on + strand, within GFF4574 at 213.269 kb on - strand, within GFF4574 at 213.375 kb on + strand at 213.457 kb on + strand at 213.457 kb on + strand at 213.457 kb on + strand at 213.457 kb on + strand at 213.457 kb on + strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.571 kb on + strand at 213.571 kb on + strand at 213.571 kb on + strand at 213.572 kb on - strand at 213.670 kb on + strand, within GFF4575 at 213.670 kb on + strand, within GFF4575 at 213.670 kb on + strand, within GFF4575 at 213.775 kb on + strand, within GFF4575 at 213.776 kb on - strand, within GFF4575 at 214.118 kb on - strand, within GFF4575 at 214.363 kb on + strand, within GFF4575 at 214.364 kb on - strand, within GFF4575 at 214.364 kb on - strand, within GFF4575 at 214.475 kb on - strand, within GFF4575 at 214.475 kb on - strand, within GFF4575 at 214.645 kb on + strand, within GFF4575 at 214.645 kb on + strand, within GFF4575 at 214.645 kb on + strand, within GFF4575 at 214.645 kb on + strand, within GFF4575 at 214.832 kb on + strand, within GFF4575 at 214.833 kb on - strand, within GFF4575 at 214.833 kb on - strand, within GFF4575 at 214.982 kb on - strand, within GFF4575 at 214.982 kb on - strand, within GFF4575 at 215.146 kb on + strand, within GFF4575 at 215.146 kb on + strand, within GFF4575 at 215.412 kb on + strand at 215.412 kb on + strand at 215.412 kb on + strand at 215.412 kb on + strand at 215.520 kb on + strand at 215.703 kb on + strand, within GFF4576 at 215.800 kb on - strand, within GFF4576 at 215.877 kb on + strand, within GFF4576 at 215.908 kb on - strand, within GFF4576 at 215.994 kb on + strand, within GFF4576 at 215.994 kb on + strand, within GFF4576 at 215.995 kb on - strand, within GFF4576 at 215.995 kb on - strand, within GFF4576 at 215.995 kb on - strand, within GFF4576 at 216.051 kb on + strand, within GFF4576 at 216.361 kb on - strand at 216.361 kb on - strand at 216.361 kb on - strand at 216.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 212,661 + GFF4574 0.28 +0.4 212,763 + GFF4574 0.38 -1.0 212,763 + GFF4574 0.38 -0.4 212,764 - GFF4574 0.38 -0.7 212,764 - GFF4574 0.38 +0.5 212,764 - GFF4574 0.38 -0.4 212,764 - GFF4574 0.38 -1.4 212,869 - GFF4574 0.49 +0.2 212,869 - GFF4574 0.49 -0.2 212,869 - GFF4574 0.49 +0.6 212,869 - GFF4574 0.49 -1.1 212,869 - GFF4574 0.49 -1.4 213,268 + GFF4574 0.89 -0.0 213,269 - GFF4574 0.89 +0.0 213,375 + -0.4 213,457 + -0.1 213,457 + +0.5 213,457 + -1.1 213,457 + +1.7 213,457 + -0.6 213,458 - -0.8 213,458 - +0.3 213,458 - +0.2 213,458 - +0.9 213,458 - +0.4 213,458 - -0.1 213,458 - -0.5 213,458 - +0.6 213,458 - -0.4 213,571 + +0.1 213,571 + +1.2 213,571 + -1.3 213,572 - -0.7 213,670 + GFF4575 0.12 -0.2 213,670 + GFF4575 0.12 -0.2 213,670 + GFF4575 0.12 +0.1 213,775 + GFF4575 0.18 +0.2 213,776 - GFF4575 0.18 -0.1 214,118 - GFF4575 0.35 -0.1 214,363 + GFF4575 0.48 +1.2 214,364 - GFF4575 0.48 -0.3 214,364 - GFF4575 0.48 -0.0 214,475 - GFF4575 0.53 +0.2 214,475 - GFF4575 0.53 -0.0 214,645 + GFF4575 0.62 -2.3 214,645 + GFF4575 0.62 +0.5 214,645 + GFF4575 0.62 -0.7 214,645 + GFF4575 0.62 -1.8 214,832 + GFF4575 0.72 +0.2 214,833 - GFF4575 0.72 +0.2 214,833 - GFF4575 0.72 -1.7 214,982 - GFF4575 0.79 +0.3 214,982 - GFF4575 0.79 +2.5 215,146 + GFF4575 0.88 +0.3 215,146 + GFF4575 0.88 -0.0 215,412 + +0.2 215,412 + -0.2 215,412 + -0.1 215,412 + -0.9 215,520 + +1.6 215,703 + GFF4576 0.28 +0.7 215,800 - GFF4576 0.38 +0.2 215,877 + GFF4576 0.46 +0.8 215,908 - GFF4576 0.49 -0.5 215,994 + GFF4576 0.57 -0.1 215,994 + GFF4576 0.57 +0.6 215,995 - GFF4576 0.57 +0.2 215,995 - GFF4576 0.57 -0.4 215,995 - GFF4576 0.57 +1.2 216,051 + GFF4576 0.63 -0.7 216,361 - -0.4 216,361 - -1.8 216,361 - +0.6 216,361 - -0.2
Or see this region's nucleotide sequence