Strain Fitness in Variovorax sp. SCN45 around GFF456

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF455 and GFF456 are separated by 22 nucleotidesGFF456 and GFF457 are separated by 188 nucleotides GFF455 - Uncharacterized UPF0721 integral membrane protein, at 493,011 to 493,838 GFF455 GFF456 - Transcriptional regulator, AraC family, at 493,861 to 494,823 GFF456 GFF457 - Nitrilase (EC 3.5.5.7), at 495,012 to 496,016 GFF457 Position (kb) 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 492.911 kb on + strandat 493.002 kb on + strandat 493.003 kb on - strandat 493.620 kb on + strand, within GFF455at 493.620 kb on + strand, within GFF455at 493.620 kb on + strand, within GFF455at 493.620 kb on + strand, within GFF455at 493.621 kb on - strand, within GFF455at 493.621 kb on - strand, within GFF455at 493.621 kb on - strand, within GFF455at 493.671 kb on + strand, within GFF455at 493.671 kb on + strand, within GFF455at 493.671 kb on + strand, within GFF455at 493.672 kb on - strand, within GFF455at 493.672 kb on - strand, within GFF455at 493.672 kb on - strand, within GFF455at 493.794 kb on + strandat 493.794 kb on + strandat 493.794 kb on + strandat 493.794 kb on + strandat 493.794 kb on + strandat 493.794 kb on + strandat 493.794 kb on + strandat 493.794 kb on + strandat 493.794 kb on + strandat 493.794 kb on + strandat 493.794 kb on + strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.795 kb on - strandat 493.809 kb on + strandat 493.809 kb on + strandat 493.809 kb on + strandat 493.809 kb on + strandat 493.810 kb on - strandat 493.810 kb on - strandat 493.810 kb on - strandat 493.810 kb on - strandat 493.810 kb on - strandat 493.810 kb on - strandat 493.810 kb on - strandat 493.958 kb on + strand, within GFF456at 493.958 kb on + strand, within GFF456at 493.958 kb on + strand, within GFF456at 493.959 kb on - strand, within GFF456at 493.959 kb on - strand, within GFF456at 494.042 kb on + strand, within GFF456at 494.042 kb on + strand, within GFF456at 494.043 kb on - strand, within GFF456at 494.043 kb on - strand, within GFF456at 494.043 kb on - strand, within GFF456at 494.043 kb on - strand, within GFF456at 494.043 kb on - strand, within GFF456at 494.043 kb on - strand, within GFF456at 494.187 kb on - strand, within GFF456at 494.187 kb on - strand, within GFF456at 494.484 kb on + strand, within GFF456at 494.484 kb on + strand, within GFF456at 494.492 kb on + strand, within GFF456at 494.492 kb on + strand, within GFF456at 494.492 kb on + strand, within GFF456at 494.493 kb on - strand, within GFF456at 494.493 kb on - strand, within GFF456at 494.582 kb on + strand, within GFF456at 494.583 kb on - strand, within GFF456at 494.744 kb on + strandat 494.744 kb on + strandat 494.744 kb on + strandat 494.745 kb on - strandat 494.745 kb on - strandat 494.771 kb on + strandat 494.772 kb on - strandat 494.925 kb on + strandat 494.925 kb on + strandat 494.943 kb on + strandat 494.944 kb on - strandat 494.986 kb on - strandat 495.174 kb on + strand, within GFF457at 495.348 kb on + strand, within GFF457at 495.348 kb on + strand, within GFF457at 495.348 kb on + strand, within GFF457at 495.349 kb on - strand, within GFF457at 495.534 kb on + strand, within GFF457at 495.534 kb on + strand, within GFF457at 495.535 kb on - strand, within GFF457at 495.535 kb on - strand, within GFF457at 495.535 kb on - strand, within GFF457at 495.535 kb on - strand, within GFF457at 495.543 kb on + strand, within GFF457at 495.543 kb on + strand, within GFF457at 495.544 kb on - strand, within GFF457at 495.595 kb on - strand, within GFF457at 495.609 kb on + strand, within GFF457at 495.609 kb on + strand, within GFF457at 495.610 kb on - strand, within GFF457at 495.610 kb on - strand, within GFF457at 495.610 kb on - strand, within GFF457at 495.610 kb on - strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.651 kb on + strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.652 kb on - strand, within GFF457at 495.679 kb on + strand, within GFF457at 495.780 kb on + strand, within GFF457at 495.780 kb on + strand, within GFF457at 495.781 kb on - strand, within GFF457at 495.781 kb on - strand, within GFF457at 495.781 kb on - strand, within GFF457at 495.781 kb on - strand, within GFF457

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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492,911 + -0.7
493,002 + -0.3
493,003 - +0.1
493,620 + GFF455 0.74 +0.8
493,620 + GFF455 0.74 +0.2
493,620 + GFF455 0.74 +0.3
493,620 + GFF455 0.74 +0.2
493,621 - GFF455 0.74 -0.2
493,621 - GFF455 0.74 -0.5
493,621 - GFF455 0.74 -0.3
493,671 + GFF455 0.80 -0.5
493,671 + GFF455 0.80 +0.6
493,671 + GFF455 0.80 -0.0
493,672 - GFF455 0.80 -0.1
493,672 - GFF455 0.80 +0.4
493,672 - GFF455 0.80 -0.3
493,794 + +0.2
493,794 + +1.0
493,794 + +0.5
493,794 + -2.1
493,794 + -1.6
493,794 + -0.8
493,794 + +2.2
493,794 + -1.1
493,794 + -0.3
493,794 + -0.2
493,794 + -0.7
493,795 - +1.0
493,795 - -0.2
493,795 - +0.6
493,795 - -0.0
493,795 - -0.0
493,795 - +0.2
493,795 - +1.1
493,795 - +0.9
493,795 - -0.4
493,795 - -0.1
493,795 - -1.4
493,795 - -0.2
493,809 + +1.6
493,809 + -0.2
493,809 + -0.4
493,809 + -1.2
493,810 - -0.2
493,810 - +0.2
493,810 - -0.4
493,810 - -0.5
493,810 - +0.4
493,810 - +0.2
493,810 - -0.5
493,958 + GFF456 0.10 -0.5
493,958 + GFF456 0.10 +0.8
493,958 + GFF456 0.10 -0.2
493,959 - GFF456 0.10 -1.0
493,959 - GFF456 0.10 +0.2
494,042 + GFF456 0.19 -1.6
494,042 + GFF456 0.19 -2.4
494,043 - GFF456 0.19 +0.7
494,043 - GFF456 0.19 +0.2
494,043 - GFF456 0.19 -1.2
494,043 - GFF456 0.19 -1.5
494,043 - GFF456 0.19 -0.8
494,043 - GFF456 0.19 -0.2
494,187 - GFF456 0.34 -0.1
494,187 - GFF456 0.34 +0.2
494,484 + GFF456 0.65 -0.0
494,484 + GFF456 0.65 -0.3
494,492 + GFF456 0.66 -0.6
494,492 + GFF456 0.66 -0.1
494,492 + GFF456 0.66 -1.0
494,493 - GFF456 0.66 -1.4
494,493 - GFF456 0.66 -0.5
494,582 + GFF456 0.75 +0.6
494,583 - GFF456 0.75 +0.5
494,744 + +0.5
494,744 + -0.9
494,744 + -0.8
494,745 - -1.1
494,745 - -0.4
494,771 + -0.1
494,772 - -0.9
494,925 + -0.2
494,925 + +0.4
494,943 + +1.0
494,944 - -0.4
494,986 - -0.6
495,174 + GFF457 0.16 +3.2
495,348 + GFF457 0.33 -0.2
495,348 + GFF457 0.33 -1.4
495,348 + GFF457 0.33 +0.1
495,349 - GFF457 0.34 -0.7
495,534 + GFF457 0.52 -1.3
495,534 + GFF457 0.52 -1.5
495,535 - GFF457 0.52 -1.6
495,535 - GFF457 0.52 +1.4
495,535 - GFF457 0.52 -1.0
495,535 - GFF457 0.52 +0.5
495,543 + GFF457 0.53 -0.3
495,543 + GFF457 0.53 -2.9
495,544 - GFF457 0.53 +0.8
495,595 - GFF457 0.58 +0.3
495,609 + GFF457 0.59 +0.2
495,609 + GFF457 0.59 +1.4
495,610 - GFF457 0.60 -0.3
495,610 - GFF457 0.60 -1.9
495,610 - GFF457 0.60 -1.2
495,610 - GFF457 0.60 -0.9
495,651 + GFF457 0.64 +0.2
495,651 + GFF457 0.64 +0.6
495,651 + GFF457 0.64 +0.4
495,651 + GFF457 0.64 +0.5
495,651 + GFF457 0.64 -0.6
495,651 + GFF457 0.64 -0.4
495,651 + GFF457 0.64 -0.7
495,652 - GFF457 0.64 -0.8
495,652 - GFF457 0.64 -0.8
495,652 - GFF457 0.64 -1.0
495,652 - GFF457 0.64 +0.5
495,652 - GFF457 0.64 +0.2
495,679 + GFF457 0.66 -1.9
495,780 + GFF457 0.76 -0.4
495,780 + GFF457 0.76 +1.2
495,781 - GFF457 0.77 -1.2
495,781 - GFF457 0.77 -1.1
495,781 - GFF457 0.77 +1.4
495,781 - GFF457 0.77 -0.5

Or see this region's nucleotide sequence