Strain Fitness in Variovorax sp. SCN45 around GFF4522

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4519 and GFF4520 are separated by 39 nucleotidesGFF4520 and GFF4521 are separated by 28 nucleotidesGFF4521 and GFF4522 are separated by 8 nucleotidesGFF4522 and GFF4523 overlap by 4 nucleotides GFF4519 - no description, at 159,588 to 159,929 GFF4519 GFF4520 - hypothetical protein, at 159,969 to 160,391 GFF4520 GFF4521 - Guanine deaminase (EC 3.5.4.3), at 160,420 to 160,914 GFF4521 GFF4522 - Uncharacterized MFS-type transporter, at 160,923 to 162,197 GFF4522 GFF4523 - Cytosine deaminase (EC 3.5.4.1), at 162,194 to 163,408 GFF4523 Position (kb) 160 161 162 163Strain fitness (log2 ratio) -1 0 1 2 3at 159.936 kb on + strandat 159.937 kb on - strandat 160.114 kb on + strand, within GFF4520at 160.114 kb on + strand, within GFF4520at 160.114 kb on + strand, within GFF4520at 160.114 kb on + strand, within GFF4520at 160.115 kb on - strand, within GFF4520at 160.115 kb on - strand, within GFF4520at 160.132 kb on + strand, within GFF4520at 160.132 kb on + strand, within GFF4520at 160.132 kb on + strand, within GFF4520at 160.132 kb on + strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.213 kb on + strand, within GFF4520at 160.213 kb on + strand, within GFF4520at 160.214 kb on - strand, within GFF4520at 160.214 kb on - strand, within GFF4520at 160.214 kb on - strand, within GFF4520at 160.228 kb on - strand, within GFF4520at 160.262 kb on - strand, within GFF4520at 160.268 kb on - strand, within GFF4520at 160.268 kb on - strand, within GFF4520at 160.348 kb on + strand, within GFF4520at 160.348 kb on + strand, within GFF4520at 160.348 kb on + strand, within GFF4520at 160.348 kb on + strand, within GFF4520at 160.349 kb on - strandat 160.349 kb on - strandat 160.349 kb on - strandat 160.386 kb on - strandat 160.386 kb on - strandat 160.386 kb on - strandat 160.386 kb on - strandat 160.386 kb on - strandat 160.617 kb on - strand, within GFF4521at 160.617 kb on - strand, within GFF4521at 160.617 kb on - strand, within GFF4521at 160.617 kb on - strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.620 kb on - strand, within GFF4521at 160.620 kb on - strand, within GFF4521at 160.620 kb on - strand, within GFF4521at 160.685 kb on + strand, within GFF4521at 160.685 kb on + strand, within GFF4521at 160.686 kb on - strand, within GFF4521at 160.686 kb on - strand, within GFF4521at 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 161.086 kb on + strand, within GFF4522at 161.086 kb on + strand, within GFF4522at 161.087 kb on - strand, within GFF4522at 161.087 kb on - strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.491 kb on + strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.492 kb on - strand, within GFF4522at 161.525 kb on - strand, within GFF4522at 161.777 kb on - strand, within GFF4522at 161.777 kb on - strand, within GFF4522at 161.809 kb on + strand, within GFF4522at 162.352 kb on - strand, within GFF4523at 162.352 kb on - strand, within GFF4523at 162.435 kb on + strand, within GFF4523at 162.435 kb on + strand, within GFF4523at 162.435 kb on + strand, within GFF4523at 162.436 kb on - strand, within GFF4523at 162.436 kb on - strand, within GFF4523at 162.436 kb on - strand, within GFF4523at 162.503 kb on + strand, within GFF4523at 162.503 kb on + strand, within GFF4523at 162.503 kb on + strand, within GFF4523at 162.662 kb on + strand, within GFF4523at 162.662 kb on + strand, within GFF4523at 162.663 kb on - strand, within GFF4523at 162.663 kb on - strand, within GFF4523at 162.812 kb on + strand, within GFF4523at 162.813 kb on - strand, within GFF4523

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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159,936 + +2.2
159,937 - -0.1
160,114 + GFF4520 0.34 -1.0
160,114 + GFF4520 0.34 +1.6
160,114 + GFF4520 0.34 -0.2
160,114 + GFF4520 0.34 -0.7
160,115 - GFF4520 0.35 -0.3
160,115 - GFF4520 0.35 -0.4
160,132 + GFF4520 0.39 +0.8
160,132 + GFF4520 0.39 -0.0
160,132 + GFF4520 0.39 -0.7
160,132 + GFF4520 0.39 -0.5
160,133 - GFF4520 0.39 -0.3
160,133 - GFF4520 0.39 +2.2
160,133 - GFF4520 0.39 -0.1
160,133 - GFF4520 0.39 -0.4
160,133 - GFF4520 0.39 +1.6
160,213 + GFF4520 0.58 -0.7
160,213 + GFF4520 0.58 +0.0
160,214 - GFF4520 0.58 +0.0
160,214 - GFF4520 0.58 -0.5
160,214 - GFF4520 0.58 +0.8
160,228 - GFF4520 0.61 +2.0
160,262 - GFF4520 0.69 +0.9
160,268 - GFF4520 0.71 +2.2
160,268 - GFF4520 0.71 -0.4
160,348 + GFF4520 0.90 +0.0
160,348 + GFF4520 0.90 +0.2
160,348 + GFF4520 0.90 +0.6
160,348 + GFF4520 0.90 +0.6
160,349 - +1.6
160,349 - -0.1
160,349 - -0.1
160,386 - +0.2
160,386 - -1.2
160,386 - -0.5
160,386 - +2.2
160,386 - +1.3
160,617 - GFF4521 0.40 +0.3
160,617 - GFF4521 0.40 -0.1
160,617 - GFF4521 0.40 -0.2
160,617 - GFF4521 0.40 -0.1
160,619 + GFF4521 0.40 +0.2
160,619 + GFF4521 0.40 -0.4
160,619 + GFF4521 0.40 +0.3
160,619 + GFF4521 0.40 -0.0
160,619 + GFF4521 0.40 +0.6
160,620 - GFF4521 0.40 -0.7
160,620 - GFF4521 0.40 -0.6
160,620 - GFF4521 0.40 +0.2
160,685 + GFF4521 0.54 -0.1
160,685 + GFF4521 0.54 +0.5
160,686 - GFF4521 0.54 -0.1
160,686 - GFF4521 0.54 +0.6
160,910 + -0.7
160,910 + +0.4
160,910 + -0.1
160,910 + -0.8
160,910 + -0.6
160,910 + -0.2
160,910 + -0.6
160,910 + +0.2
160,910 + -0.2
160,911 - -0.1
160,911 - -0.7
160,911 - +0.2
160,911 - +0.4
160,911 - -0.4
160,911 - -0.5
160,911 - +1.2
161,086 + GFF4522 0.13 -1.7
161,086 + GFF4522 0.13 -0.2
161,087 - GFF4522 0.13 +3.2
161,087 - GFF4522 0.13 +0.2
161,491 + GFF4522 0.45 -0.8
161,491 + GFF4522 0.45 -0.2
161,491 + GFF4522 0.45 -0.8
161,491 + GFF4522 0.45 -0.7
161,491 + GFF4522 0.45 +0.6
161,491 + GFF4522 0.45 +0.5
161,491 + GFF4522 0.45 +0.7
161,491 + GFF4522 0.45 +0.8
161,492 - GFF4522 0.45 +0.8
161,492 - GFF4522 0.45 -1.3
161,492 - GFF4522 0.45 -0.1
161,492 - GFF4522 0.45 +0.3
161,492 - GFF4522 0.45 -0.4
161,492 - GFF4522 0.45 -0.8
161,492 - GFF4522 0.45 +0.2
161,492 - GFF4522 0.45 -0.4
161,525 - GFF4522 0.47 +1.2
161,777 - GFF4522 0.67 -0.2
161,777 - GFF4522 0.67 +0.9
161,809 + GFF4522 0.69 -1.2
162,352 - GFF4523 0.13 -0.4
162,352 - GFF4523 0.13 -0.8
162,435 + GFF4523 0.20 +0.8
162,435 + GFF4523 0.20 -0.1
162,435 + GFF4523 0.20 -0.3
162,436 - GFF4523 0.20 -0.5
162,436 - GFF4523 0.20 -0.7
162,436 - GFF4523 0.20 -0.2
162,503 + GFF4523 0.25 +0.7
162,503 + GFF4523 0.25 +1.8
162,503 + GFF4523 0.25 -0.4
162,662 + GFF4523 0.39 +0.2
162,662 + GFF4523 0.39 -0.5
162,663 - GFF4523 0.39 -0.1
162,663 - GFF4523 0.39 +1.2
162,812 + GFF4523 0.51 -0.5
162,813 - GFF4523 0.51 +0.3

Or see this region's nucleotide sequence