Strain Fitness in Variovorax sp. SCN45 around GFF4504

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4502 and GFF4503 overlap by 4 nucleotidesGFF4503 and GFF4504 are separated by 49 nucleotidesGFF4504 and GFF4505 are separated by 303 nucleotides GFF4502 - Putative transmembrane protein, at 145,986 to 146,726 GFF4502 GFF4503 - RNA polymerase sigma factor, at 146,723 to 147,295 GFF4503 GFF4504 - FIG00953527: hypothetical protein, at 147,345 to 147,914 GFF4504 GFF4505 - hypothetical protein, at 148,218 to 149,147 GFF4505 Position (kb) 147 148Strain fitness (log2 ratio) -2 -1 0 1 2at 146.498 kb on + strand, within GFF4502at 146.498 kb on + strand, within GFF4502at 146.498 kb on + strand, within GFF4502at 146.499 kb on - strand, within GFF4502at 146.499 kb on - strand, within GFF4502at 146.499 kb on - strand, within GFF4502at 146.499 kb on - strand, within GFF4502at 146.668 kb on + strandat 146.668 kb on + strandat 146.669 kb on - strandat 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.835 kb on + strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.836 kb on - strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.841 kb on + strand, within GFF4503at 146.842 kb on - strand, within GFF4503at 146.842 kb on - strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.940 kb on + strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 146.941 kb on - strand, within GFF4503at 147.051 kb on + strand, within GFF4503at 147.051 kb on + strand, within GFF4503at 147.051 kb on + strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.052 kb on - strand, within GFF4503at 147.186 kb on + strand, within GFF4503at 147.187 kb on - strand, within GFF4503at 147.187 kb on - strand, within GFF4503at 147.204 kb on + strand, within GFF4503at 147.204 kb on + strand, within GFF4503at 147.205 kb on - strand, within GFF4503at 147.205 kb on - strand, within GFF4503at 147.262 kb on - strandat 147.262 kb on - strandat 147.306 kb on + strandat 147.367 kb on + strandat 147.367 kb on + strandat 147.367 kb on + strandat 147.368 kb on - strandat 147.379 kb on + strandat 147.379 kb on + strandat 147.379 kb on + strandat 147.380 kb on - strandat 147.380 kb on - strandat 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.469 kb on + strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.470 kb on - strand, within GFF4504at 147.619 kb on + strand, within GFF4504at 147.620 kb on - strand, within GFF4504at 147.622 kb on + strand, within GFF4504at 147.622 kb on + strand, within GFF4504at 147.622 kb on + strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.623 kb on - strand, within GFF4504at 147.724 kb on + strand, within GFF4504at 147.724 kb on + strand, within GFF4504at 147.724 kb on + strand, within GFF4504at 147.725 kb on - strand, within GFF4504at 147.725 kb on - strand, within GFF4504at 147.934 kb on + strandat 147.934 kb on + strandat 147.934 kb on + strandat 147.934 kb on + strandat 147.935 kb on - strandat 147.935 kb on - strandat 147.935 kb on - strandat 147.935 kb on - strandat 147.935 kb on - strandat 147.935 kb on - strandat 147.968 kb on + strandat 147.968 kb on + strandat 147.996 kb on + strandat 147.996 kb on + strandat 147.996 kb on + strandat 147.996 kb on + strandat 147.996 kb on + strandat 147.996 kb on + strandat 147.996 kb on + strandat 147.997 kb on - strandat 147.997 kb on - strandat 147.997 kb on - strandat 148.061 kb on + strandat 148.061 kb on + strandat 148.111 kb on + strandat 148.111 kb on + strandat 148.111 kb on + strandat 148.111 kb on + strandat 148.111 kb on + strandat 148.112 kb on + strandat 148.112 kb on - strandat 148.112 kb on - strandat 148.112 kb on - strandat 148.140 kb on + strandat 148.140 kb on + strandat 148.140 kb on + strandat 148.140 kb on + strandat 148.141 kb on - strandat 148.141 kb on - strandat 148.141 kb on - strandat 148.206 kb on + strandat 148.207 kb on - strandat 148.207 kb on - strandat 148.207 kb on - strandat 148.267 kb on - strandat 148.267 kb on - strandat 148.267 kb on - strandat 148.267 kb on - strandat 148.267 kb on - strandat 148.334 kb on - strand, within GFF4505at 148.635 kb on + strand, within GFF4505at 148.635 kb on + strand, within GFF4505at 148.636 kb on - strand, within GFF4505at 148.636 kb on - strand, within GFF4505at 148.636 kb on - strand, within GFF4505at 148.636 kb on - strand, within GFF4505at 148.728 kb on - strand, within GFF4505at 148.728 kb on - strand, within GFF4505at 148.737 kb on + strand, within GFF4505at 148.737 kb on + strand, within GFF4505at 148.738 kb on - strand, within GFF4505

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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146,498 + GFF4502 0.69 +0.2
146,498 + GFF4502 0.69 -0.4
146,498 + GFF4502 0.69 -0.1
146,499 - GFF4502 0.69 +0.8
146,499 - GFF4502 0.69 -0.2
146,499 - GFF4502 0.69 -1.4
146,499 - GFF4502 0.69 -0.6
146,668 + -0.5
146,668 + -0.7
146,669 - -0.5
146,835 + GFF4503 0.20 -1.2
146,835 + GFF4503 0.20 +1.2
146,835 + GFF4503 0.20 +0.2
146,835 + GFF4503 0.20 -0.1
146,835 + GFF4503 0.20 -0.4
146,835 + GFF4503 0.20 -1.1
146,835 + GFF4503 0.20 +0.2
146,835 + GFF4503 0.20 -0.2
146,835 + GFF4503 0.20 -0.7
146,835 + GFF4503 0.20 -1.3
146,835 + GFF4503 0.20 -1.5
146,835 + GFF4503 0.20 -0.5
146,835 + GFF4503 0.20 -0.5
146,836 - GFF4503 0.20 -0.6
146,836 - GFF4503 0.20 -0.3
146,836 - GFF4503 0.20 -1.5
146,836 - GFF4503 0.20 +0.0
146,836 - GFF4503 0.20 +0.5
146,836 - GFF4503 0.20 +0.2
146,836 - GFF4503 0.20 -0.2
146,836 - GFF4503 0.20 +0.0
146,836 - GFF4503 0.20 -0.0
146,836 - GFF4503 0.20 -0.2
146,836 - GFF4503 0.20 +0.9
146,836 - GFF4503 0.20 +0.0
146,836 - GFF4503 0.20 -0.1
146,836 - GFF4503 0.20 +0.2
146,836 - GFF4503 0.20 -0.2
146,836 - GFF4503 0.20 +0.3
146,836 - GFF4503 0.20 -0.5
146,841 + GFF4503 0.21 +0.2
146,841 + GFF4503 0.21 -0.8
146,841 + GFF4503 0.21 +0.4
146,841 + GFF4503 0.21 +0.0
146,841 + GFF4503 0.21 +0.2
146,841 + GFF4503 0.21 -0.2
146,841 + GFF4503 0.21 +0.4
146,842 - GFF4503 0.21 -0.8
146,842 - GFF4503 0.21 -0.5
146,940 + GFF4503 0.38 -0.7
146,940 + GFF4503 0.38 +0.9
146,940 + GFF4503 0.38 -0.2
146,940 + GFF4503 0.38 -1.1
146,940 + GFF4503 0.38 -1.9
146,941 - GFF4503 0.38 +0.2
146,941 - GFF4503 0.38 -1.8
146,941 - GFF4503 0.38 +0.7
146,941 - GFF4503 0.38 -0.1
146,941 - GFF4503 0.38 +1.6
146,941 - GFF4503 0.38 -1.0
146,941 - GFF4503 0.38 +0.3
147,051 + GFF4503 0.57 -0.5
147,051 + GFF4503 0.57 +0.3
147,051 + GFF4503 0.57 -0.9
147,052 - GFF4503 0.57 -0.7
147,052 - GFF4503 0.57 -0.5
147,052 - GFF4503 0.57 +0.6
147,052 - GFF4503 0.57 -1.2
147,052 - GFF4503 0.57 +0.7
147,186 + GFF4503 0.81 -0.2
147,187 - GFF4503 0.81 -0.2
147,187 - GFF4503 0.81 -2.2
147,204 + GFF4503 0.84 -0.1
147,204 + GFF4503 0.84 -0.7
147,205 - GFF4503 0.84 +0.3
147,205 - GFF4503 0.84 +1.0
147,262 - +1.7
147,262 - -0.7
147,306 + -0.4
147,367 + -1.2
147,367 + -1.5
147,367 + +0.2
147,368 - +0.2
147,379 + +0.6
147,379 + -0.8
147,379 + +0.7
147,380 - +0.4
147,380 - -0.1
147,469 + GFF4504 0.22 -0.5
147,469 + GFF4504 0.22 -0.2
147,469 + GFF4504 0.22 -0.3
147,469 + GFF4504 0.22 -0.2
147,469 + GFF4504 0.22 -1.4
147,469 + GFF4504 0.22 -0.9
147,469 + GFF4504 0.22 +1.5
147,470 - GFF4504 0.22 +0.8
147,470 - GFF4504 0.22 +0.4
147,470 - GFF4504 0.22 +1.2
147,470 - GFF4504 0.22 -0.8
147,470 - GFF4504 0.22 -0.1
147,470 - GFF4504 0.22 +1.1
147,470 - GFF4504 0.22 +0.7
147,470 - GFF4504 0.22 +0.1
147,470 - GFF4504 0.22 -0.2
147,470 - GFF4504 0.22 +0.4
147,470 - GFF4504 0.22 -0.1
147,470 - GFF4504 0.22 -0.2
147,470 - GFF4504 0.22 -1.1
147,470 - GFF4504 0.22 -1.1
147,470 - GFF4504 0.22 +0.2
147,619 + GFF4504 0.48 -0.5
147,620 - GFF4504 0.48 +0.8
147,622 + GFF4504 0.49 -0.2
147,622 + GFF4504 0.49 +0.7
147,622 + GFF4504 0.49 -0.3
147,623 - GFF4504 0.49 +0.4
147,623 - GFF4504 0.49 -1.1
147,623 - GFF4504 0.49 -0.9
147,623 - GFF4504 0.49 +0.2
147,623 - GFF4504 0.49 +0.5
147,724 + GFF4504 0.66 -0.5
147,724 + GFF4504 0.66 -0.3
147,724 + GFF4504 0.66 +0.7
147,725 - GFF4504 0.67 +1.2
147,725 - GFF4504 0.67 -0.4
147,934 + +2.4
147,934 + -1.2
147,934 + +0.9
147,934 + +1.2
147,935 - +1.3
147,935 - +1.2
147,935 - -0.2
147,935 - +0.8
147,935 - +0.4
147,935 - -0.2
147,968 + -0.2
147,968 + +0.6
147,996 + +1.3
147,996 + +0.2
147,996 + -0.2
147,996 + +1.3
147,996 + -1.3
147,996 + +0.5
147,996 + -0.3
147,997 - -0.4
147,997 - -0.3
147,997 - -0.0
148,061 + +0.2
148,061 + -1.0
148,111 + +0.6
148,111 + +0.2
148,111 + -0.2
148,111 + -0.0
148,111 + -0.5
148,112 + -0.5
148,112 - +0.1
148,112 - -0.7
148,112 - -1.2
148,140 + +0.1
148,140 + -0.3
148,140 + +0.3
148,140 + +0.6
148,141 - +0.3
148,141 - +0.5
148,141 - +0.3
148,206 + +0.4
148,207 - +1.1
148,207 - +0.9
148,207 - -0.1
148,267 - -1.1
148,267 - -0.4
148,267 - +0.1
148,267 - -0.7
148,267 - -0.4
148,334 - GFF4505 0.12 -0.8
148,635 + GFF4505 0.45 -0.2
148,635 + GFF4505 0.45 +0.0
148,636 - GFF4505 0.45 +0.3
148,636 - GFF4505 0.45 -0.4
148,636 - GFF4505 0.45 -0.4
148,636 - GFF4505 0.45 -0.2
148,728 - GFF4505 0.55 +0.4
148,728 - GFF4505 0.55 +0.6
148,737 + GFF4505 0.56 +0.2
148,737 + GFF4505 0.56 -1.3
148,738 - GFF4505 0.56 -1.0

Or see this region's nucleotide sequence