Strain Fitness in Variovorax sp. SCN45 around GFF450

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF449 and GFF450 overlap by 16 nucleotidesGFF450 and GFF451 overlap by 4 nucleotidesGFF451 and GFF452 are separated by 243 nucleotides GFF449 - Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11), at 486,605 to 488,026 GFF449 GFF450 - Outer membrane vitamin B12 receptor BtuB, at 488,011 to 489,927 GFF450 GFF451 - no description, at 489,924 to 490,085 GFF451 GFF452 - Chloride channel protein, at 490,329 to 492,044 GFF452 Position (kb) 488 489 490Strain fitness (log2 ratio) -1 0 1 2 3 4at 487.210 kb on - strand, within GFF449at 487.585 kb on - strand, within GFF449at 488.012 kb on + strandat 488.013 kb on - strandat 488.013 kb on - strandat 488.013 kb on - strandat 488.013 kb on - strandat 488.013 kb on - strandat 488.039 kb on + strandat 488.039 kb on + strandat 488.039 kb on + strandat 488.039 kb on + strandat 488.040 kb on - strandat 488.040 kb on - strandat 488.063 kb on + strandat 488.064 kb on - strandat 488.075 kb on + strandat 488.075 kb on + strandat 488.075 kb on + strandat 488.076 kb on - strandat 488.076 kb on - strandat 488.081 kb on + strandat 488.081 kb on + strandat 488.081 kb on + strandat 488.082 kb on - strandat 488.082 kb on - strandat 488.169 kb on - strandat 488.204 kb on + strand, within GFF450at 488.205 kb on - strand, within GFF450at 488.402 kb on + strand, within GFF450at 488.426 kb on + strand, within GFF450at 488.498 kb on + strand, within GFF450at 488.498 kb on + strand, within GFF450at 488.498 kb on + strand, within GFF450at 488.498 kb on + strand, within GFF450at 488.498 kb on + strand, within GFF450at 488.499 kb on - strand, within GFF450at 488.499 kb on - strand, within GFF450at 488.499 kb on - strand, within GFF450at 488.534 kb on + strand, within GFF450at 488.535 kb on - strand, within GFF450at 488.535 kb on - strand, within GFF450at 488.535 kb on - strand, within GFF450at 488.535 kb on - strand, within GFF450at 488.535 kb on - strand, within GFF450at 488.535 kb on - strand, within GFF450at 488.535 kb on - strand, within GFF450at 488.535 kb on - strand, within GFF450at 488.591 kb on + strand, within GFF450at 488.592 kb on - strand, within GFF450at 488.609 kb on + strand, within GFF450at 488.609 kb on + strand, within GFF450at 488.609 kb on + strand, within GFF450at 488.609 kb on + strand, within GFF450at 488.609 kb on + strand, within GFF450at 488.609 kb on + strand, within GFF450at 488.610 kb on - strand, within GFF450at 488.610 kb on - strand, within GFF450at 488.675 kb on + strand, within GFF450at 488.675 kb on + strand, within GFF450at 488.676 kb on - strand, within GFF450at 488.681 kb on + strand, within GFF450at 488.918 kb on + strand, within GFF450at 488.918 kb on + strand, within GFF450at 488.945 kb on + strand, within GFF450at 488.945 kb on + strand, within GFF450at 488.945 kb on + strand, within GFF450at 488.945 kb on + strand, within GFF450at 488.945 kb on + strand, within GFF450at 488.966 kb on + strand, within GFF450at 488.966 kb on + strand, within GFF450at 488.966 kb on + strand, within GFF450at 488.966 kb on + strand, within GFF450at 488.966 kb on + strand, within GFF450at 488.966 kb on + strand, within GFF450at 488.967 kb on - strand, within GFF450at 488.967 kb on - strand, within GFF450at 488.967 kb on - strand, within GFF450at 489.005 kb on + strand, within GFF450at 489.005 kb on + strand, within GFF450at 489.005 kb on + strand, within GFF450at 489.006 kb on - strand, within GFF450at 489.006 kb on - strand, within GFF450at 489.006 kb on - strand, within GFF450at 489.006 kb on - strand, within GFF450at 489.006 kb on - strand, within GFF450at 489.054 kb on + strand, within GFF450at 489.054 kb on + strand, within GFF450at 489.054 kb on + strand, within GFF450at 489.054 kb on + strand, within GFF450at 489.055 kb on - strand, within GFF450at 489.055 kb on - strand, within GFF450at 489.055 kb on - strand, within GFF450at 489.055 kb on - strand, within GFF450at 489.101 kb on + strand, within GFF450at 489.101 kb on + strand, within GFF450at 489.101 kb on + strand, within GFF450at 489.102 kb on - strand, within GFF450at 489.102 kb on - strand, within GFF450at 489.102 kb on - strand, within GFF450at 489.119 kb on + strand, within GFF450at 489.119 kb on + strand, within GFF450at 489.120 kb on - strand, within GFF450at 489.120 kb on - strand, within GFF450at 489.215 kb on + strand, within GFF450at 489.216 kb on - strand, within GFF450at 489.216 kb on - strand, within GFF450at 489.284 kb on + strand, within GFF450at 489.284 kb on + strand, within GFF450at 489.284 kb on + strand, within GFF450at 489.284 kb on + strand, within GFF450at 489.284 kb on + strand, within GFF450at 489.284 kb on + strand, within GFF450at 489.285 kb on - strand, within GFF450at 489.285 kb on - strand, within GFF450at 489.285 kb on - strand, within GFF450at 489.285 kb on - strand, within GFF450at 489.285 kb on - strand, within GFF450at 489.285 kb on - strand, within GFF450at 489.285 kb on - strand, within GFF450at 489.285 kb on - strand, within GFF450at 489.320 kb on + strand, within GFF450at 489.321 kb on - strand, within GFF450at 489.321 kb on - strand, within GFF450at 489.321 kb on - strand, within GFF450at 489.321 kb on - strand, within GFF450at 489.374 kb on + strand, within GFF450at 489.374 kb on + strand, within GFF450at 489.375 kb on - strand, within GFF450at 489.375 kb on - strand, within GFF450at 489.375 kb on - strand, within GFF450at 489.467 kb on + strand, within GFF450at 489.467 kb on + strand, within GFF450at 489.467 kb on + strand, within GFF450at 489.467 kb on + strand, within GFF450at 489.468 kb on - strand, within GFF450at 489.468 kb on - strand, within GFF450at 489.468 kb on - strand, within GFF450at 489.581 kb on + strand, within GFF450at 489.582 kb on - strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.630 kb on + strand, within GFF450at 489.630 kb on + strand, within GFF450at 489.630 kb on + strand, within GFF450at 489.631 kb on - strand, within GFF450at 489.631 kb on - strand, within GFF450at 489.631 kb on - strand, within GFF450at 489.631 kb on - strand, within GFF450at 490.272 kb on + strandat 490.293 kb on + strandat 490.294 kb on - strandat 490.355 kb on + strandat 490.355 kb on + strandat 490.473 kb on + strandat 490.473 kb on + strandat 490.474 kb on - strandat 490.638 kb on + strand, within GFF452at 490.638 kb on + strand, within GFF452at 490.638 kb on + strand, within GFF452at 490.639 kb on - strand, within GFF452at 490.639 kb on - strand, within GFF452at 490.639 kb on - strand, within GFF452at 490.869 kb on + strand, within GFF452at 490.869 kb on + strand, within GFF452

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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487,210 - GFF449 0.43 +0.6
487,585 - GFF449 0.69 -0.9
488,012 + -0.2
488,013 - -0.1
488,013 - -0.6
488,013 - -0.2
488,013 - -0.3
488,013 - -0.4
488,039 + +0.2
488,039 + -0.7
488,039 + +0.6
488,039 + -0.5
488,040 - -1.0
488,040 - +0.7
488,063 + -0.0
488,064 - +0.7
488,075 + +0.9
488,075 + -0.3
488,075 + +0.1
488,076 - +0.5
488,076 - -0.1
488,081 + +0.2
488,081 + -0.4
488,081 + -0.5
488,082 - -0.4
488,082 - -0.0
488,169 - -0.2
488,204 + GFF450 0.10 -0.3
488,205 - GFF450 0.10 -0.6
488,402 + GFF450 0.20 +0.5
488,426 + GFF450 0.22 +0.0
488,498 + GFF450 0.25 -0.8
488,498 + GFF450 0.25 -0.6
488,498 + GFF450 0.25 -0.6
488,498 + GFF450 0.25 +0.9
488,498 + GFF450 0.25 +0.1
488,499 - GFF450 0.25 +1.2
488,499 - GFF450 0.25 +0.9
488,499 - GFF450 0.25 +0.4
488,534 + GFF450 0.27 -0.5
488,535 - GFF450 0.27 -0.6
488,535 - GFF450 0.27 -0.4
488,535 - GFF450 0.27 +1.0
488,535 - GFF450 0.27 +0.8
488,535 - GFF450 0.27 -0.0
488,535 - GFF450 0.27 +0.7
488,535 - GFF450 0.27 +0.1
488,535 - GFF450 0.27 +0.1
488,591 + GFF450 0.30 -0.0
488,592 - GFF450 0.30 +0.1
488,609 + GFF450 0.31 +0.3
488,609 + GFF450 0.31 -0.6
488,609 + GFF450 0.31 +0.3
488,609 + GFF450 0.31 -0.0
488,609 + GFF450 0.31 -0.2
488,609 + GFF450 0.31 +0.2
488,610 - GFF450 0.31 +0.5
488,610 - GFF450 0.31 +0.8
488,675 + GFF450 0.35 -0.3
488,675 + GFF450 0.35 +0.3
488,676 - GFF450 0.35 +1.3
488,681 + GFF450 0.35 -0.0
488,918 + GFF450 0.47 -1.0
488,918 + GFF450 0.47 -0.1
488,945 + GFF450 0.49 -0.9
488,945 + GFF450 0.49 +0.3
488,945 + GFF450 0.49 +0.3
488,945 + GFF450 0.49 +1.2
488,945 + GFF450 0.49 -0.2
488,966 + GFF450 0.50 -0.8
488,966 + GFF450 0.50 -0.2
488,966 + GFF450 0.50 +0.2
488,966 + GFF450 0.50 +0.8
488,966 + GFF450 0.50 +2.6
488,966 + GFF450 0.50 +0.1
488,967 - GFF450 0.50 -0.8
488,967 - GFF450 0.50 +2.2
488,967 - GFF450 0.50 -1.1
489,005 + GFF450 0.52 +0.3
489,005 + GFF450 0.52 -0.9
489,005 + GFF450 0.52 +1.1
489,006 - GFF450 0.52 +0.6
489,006 - GFF450 0.52 -1.5
489,006 - GFF450 0.52 +0.4
489,006 - GFF450 0.52 -0.5
489,006 - GFF450 0.52 +0.1
489,054 + GFF450 0.54 +0.6
489,054 + GFF450 0.54 -0.4
489,054 + GFF450 0.54 -0.0
489,054 + GFF450 0.54 -0.1
489,055 - GFF450 0.54 +1.2
489,055 - GFF450 0.54 -1.0
489,055 - GFF450 0.54 +0.0
489,055 - GFF450 0.54 +1.9
489,101 + GFF450 0.57 +0.2
489,101 + GFF450 0.57 -0.4
489,101 + GFF450 0.57 -0.2
489,102 - GFF450 0.57 -0.5
489,102 - GFF450 0.57 +0.9
489,102 - GFF450 0.57 +0.1
489,119 + GFF450 0.58 +1.2
489,119 + GFF450 0.58 -0.4
489,120 - GFF450 0.58 +0.4
489,120 - GFF450 0.58 -0.3
489,215 + GFF450 0.63 +0.6
489,216 - GFF450 0.63 -0.5
489,216 - GFF450 0.63 -0.3
489,284 + GFF450 0.66 -0.2
489,284 + GFF450 0.66 -0.4
489,284 + GFF450 0.66 +0.4
489,284 + GFF450 0.66 -0.0
489,284 + GFF450 0.66 +0.2
489,284 + GFF450 0.66 -1.1
489,285 - GFF450 0.66 -0.4
489,285 - GFF450 0.66 +0.8
489,285 - GFF450 0.66 -0.2
489,285 - GFF450 0.66 +1.3
489,285 - GFF450 0.66 +0.1
489,285 - GFF450 0.66 +1.9
489,285 - GFF450 0.66 +1.9
489,285 - GFF450 0.66 -0.1
489,320 + GFF450 0.68 -0.2
489,321 - GFF450 0.68 -1.6
489,321 - GFF450 0.68 +0.4
489,321 - GFF450 0.68 -0.3
489,321 - GFF450 0.68 +0.2
489,374 + GFF450 0.71 +0.7
489,374 + GFF450 0.71 -0.3
489,375 - GFF450 0.71 -0.7
489,375 - GFF450 0.71 +0.3
489,375 - GFF450 0.71 -0.2
489,467 + GFF450 0.76 -1.0
489,467 + GFF450 0.76 -0.7
489,467 + GFF450 0.76 +0.2
489,467 + GFF450 0.76 -0.8
489,468 - GFF450 0.76 -0.2
489,468 - GFF450 0.76 -0.8
489,468 - GFF450 0.76 -0.5
489,581 + GFF450 0.82 +1.2
489,582 - GFF450 0.82 +0.6
489,617 + GFF450 0.84 +3.9
489,617 + GFF450 0.84 +1.3
489,617 + GFF450 0.84 -1.7
489,617 + GFF450 0.84 -0.2
489,617 + GFF450 0.84 -0.3
489,618 - GFF450 0.84 -0.2
489,618 - GFF450 0.84 -0.4
489,618 - GFF450 0.84 +1.5
489,618 - GFF450 0.84 +0.4
489,618 - GFF450 0.84 +0.3
489,630 + GFF450 0.84 +0.6
489,630 + GFF450 0.84 -0.2
489,630 + GFF450 0.84 +0.4
489,631 - GFF450 0.85 -0.3
489,631 - GFF450 0.85 -0.6
489,631 - GFF450 0.85 -1.3
489,631 - GFF450 0.85 +0.6
490,272 + -0.9
490,293 + +0.6
490,294 - +0.1
490,355 + -0.2
490,355 + +0.4
490,473 + +0.1
490,473 + -0.5
490,474 - -0.6
490,638 + GFF452 0.18 +0.8
490,638 + GFF452 0.18 +0.8
490,638 + GFF452 0.18 -1.4
490,639 - GFF452 0.18 +0.4
490,639 - GFF452 0.18 -1.2
490,639 - GFF452 0.18 -0.1
490,869 + GFF452 0.31 -1.0
490,869 + GFF452 0.31 +2.2

Or see this region's nucleotide sequence