Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4439 and GFF4440 are separated by 55 nucleotides GFF4440 and GFF4441 are separated by 15 nucleotides
GFF4439 - Probable transmembrane protein, at 78,802 to 80,199
GFF4439
GFF4440 - Ribosomal protein L11 methyltransferase, at 80,255 to 81,142
GFF4440
GFF4441 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 81,158 to 82,507
GFF4441
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.015 kb on + strand, within GFF4439 at 80.015 kb on + strand, within GFF4439 at 80.015 kb on + strand, within GFF4439 at 80.015 kb on + strand, within GFF4439 at 80.015 kb on + strand, within GFF4439 at 80.015 kb on + strand, within GFF4439 at 80.015 kb on + strand, within GFF4439 at 80.015 kb on + strand, within GFF4439 at 80.015 kb on + strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.016 kb on - strand, within GFF4439 at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.213 kb on + strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.316 kb on + strand at 80.316 kb on + strand at 80.316 kb on + strand at 80.317 kb on - strand at 80.317 kb on - strand at 80.325 kb on + strand at 80.325 kb on + strand at 80.325 kb on + strand at 80.325 kb on + strand at 80.325 kb on + strand at 80.325 kb on + strand at 80.325 kb on + strand at 80.325 kb on + strand at 80.325 kb on + strand at 80.325 kb on + strand at 80.326 kb on - strand at 80.326 kb on - strand at 80.326 kb on - strand at 80.326 kb on - strand at 80.326 kb on - strand at 80.326 kb on - strand at 80.326 kb on - strand at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.463 kb on + strand, within GFF4440 at 80.464 kb on - strand, within GFF4440 at 80.464 kb on - strand, within GFF4440 at 80.464 kb on - strand, within GFF4440 at 80.464 kb on - strand, within GFF4440 at 80.464 kb on - strand, within GFF4440 at 80.464 kb on - strand, within GFF4440 at 80.464 kb on - strand, within GFF4440 at 80.464 kb on - strand, within GFF4440 at 80.464 kb on - strand, within GFF4440 at 80.628 kb on + strand, within GFF4440 at 80.628 kb on + strand, within GFF4440 at 80.628 kb on + strand, within GFF4440 at 80.628 kb on + strand, within GFF4440 at 80.629 kb on - strand, within GFF4440 at 80.629 kb on - strand, within GFF4440 at 80.629 kb on - strand, within GFF4440 at 80.809 kb on - strand, within GFF4440
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 80,015 + GFF4439 0.87 +0.4 80,015 + GFF4439 0.87 +0.3 80,015 + GFF4439 0.87 +1.2 80,015 + GFF4439 0.87 +0.3 80,015 + GFF4439 0.87 +0.7 80,015 + GFF4439 0.87 -0.6 80,015 + GFF4439 0.87 +0.3 80,015 + GFF4439 0.87 +1.2 80,015 + GFF4439 0.87 +0.2 80,016 - GFF4439 0.87 +1.0 80,016 - GFF4439 0.87 +0.6 80,016 - GFF4439 0.87 +0.9 80,016 - GFF4439 0.87 +0.5 80,016 - GFF4439 0.87 +2.2 80,016 - GFF4439 0.87 +0.6 80,016 - GFF4439 0.87 +0.3 80,016 - GFF4439 0.87 +0.3 80,016 - GFF4439 0.87 +0.7 80,016 - GFF4439 0.87 +0.7 80,213 + -0.2 80,213 + -0.5 80,213 + -1.1 80,213 + -0.2 80,213 + +0.2 80,213 + -0.8 80,213 + +0.7 80,213 + +0.5 80,213 + +0.3 80,213 + +0.2 80,213 + +0.2 80,213 + -0.6 80,213 + -0.5 80,214 - -0.1 80,214 - +0.3 80,214 - +0.1 80,214 - +0.2 80,214 - -1.5 80,214 - +0.2 80,214 - -0.1 80,214 - +0.1 80,214 - +0.1 80,214 - +1.4 80,214 - -0.8 80,214 - -0.7 80,214 - +0.0 80,316 + +0.6 80,316 + -0.5 80,316 + +0.2 80,317 - -0.5 80,317 - -1.0 80,325 + -0.4 80,325 + -0.2 80,325 + +0.8 80,325 + -0.4 80,325 + -0.8 80,325 + -0.4 80,325 + -0.7 80,325 + +0.2 80,325 + -0.7 80,325 + -0.2 80,326 - -0.4 80,326 - -0.2 80,326 - +0.2 80,326 - -0.7 80,326 - -0.7 80,326 - +1.3 80,326 - -0.1 80,463 + GFF4440 0.23 -1.0 80,463 + GFF4440 0.23 -0.0 80,463 + GFF4440 0.23 -0.4 80,463 + GFF4440 0.23 +0.8 80,463 + GFF4440 0.23 +0.6 80,463 + GFF4440 0.23 -0.3 80,463 + GFF4440 0.23 -0.5 80,463 + GFF4440 0.23 -1.0 80,463 + GFF4440 0.23 -1.8 80,463 + GFF4440 0.23 -0.2 80,463 + GFF4440 0.23 -0.6 80,463 + GFF4440 0.23 -0.7 80,464 - GFF4440 0.24 -1.1 80,464 - GFF4440 0.24 -1.1 80,464 - GFF4440 0.24 -0.0 80,464 - GFF4440 0.24 -0.7 80,464 - GFF4440 0.24 -0.2 80,464 - GFF4440 0.24 -1.8 80,464 - GFF4440 0.24 +0.3 80,464 - GFF4440 0.24 -0.4 80,464 - GFF4440 0.24 +0.7 80,628 + GFF4440 0.42 -0.4 80,628 + GFF4440 0.42 +0.3 80,628 + GFF4440 0.42 -1.0 80,628 + GFF4440 0.42 +1.8 80,629 - GFF4440 0.42 +0.8 80,629 - GFF4440 0.42 -0.7 80,629 - GFF4440 0.42 +0.4 80,809 - GFF4440 0.62 -0.4
Or see this region's nucleotide sequence