Strain Fitness in Variovorax sp. SCN45 around GFF4382

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
11,334	+				-0.4
11,380	-				-0.7
11,400	+				+1.2
11,410	+				+0.3
11,411	-				+0.3
11,411	-				+0.3
11,422	+				-1.3
11,422	+				-0.8
11,423	-				-0.6
11,449	-				+1.7
11,466	+				-0.2
11,466	+				+1.6
11,466	+				+0.2
11,467	-				-0.5
11,467	-				-0.2
11,467	-				+1.1
11,467	-				-0.0
11,518	+				-1.4
11,518	+				-0.4
11,518	+				+0.7
11,518	+				+0.6
11,518	+				+0.0
11,518	+				-0.7
11,518	+				-0.7
11,519	-				-0.1
11,519	-				-1.5
11,519	-				-0.7
11,544	+				-0.8
11,544	+				+0.6
11,544	+				+0.7
11,544	+				+1.6
11,544	+				+0.7
11,544	+				-0.7
11,544	+				+0.2
11,544	+				-1.3
11,544	+				+0.8
11,544	+				-2.2
11,544	+				+0.2
11,544	+				-0.7
11,544	+				-0.2
11,544	+				-1.0
11,545	-				-0.8
11,545	-				-0.2
11,545	-				-0.4
11,545	-				+2.2
11,545	-				+1.2
11,545	-				+2.2
11,545	-				-0.7
11,545	-				-0.7
11,545	-				-1.2
11,545	-				-0.5
11,777	+		GFF4381	0.40	+0.6
11,809	+		GFF4381	0.49	-0.1
11,809	+		GFF4381	0.49	-0.7
11,809	+		GFF4381	0.49	-0.7
11,809	+		GFF4381	0.49	-0.9
11,810	-		GFF4381	0.49	-0.2
11,810	-		GFF4381	0.49	+0.2
11,918	-		GFF4381	0.80	-0.7
11,918	-		GFF4381	0.80	+0.8
11,918	-		GFF4381	0.80	-0.6
11,918	-		GFF4381	0.80	-0.7
11,947	+		GFF4381	0.88	-0.4
11,947	+		GFF4381	0.88	+0.3
11,947	+		GFF4381	0.88	+0.4
11,947	+		GFF4381	0.88	-0.1
11,947	+		GFF4381	0.88	-0.7
11,947	+		GFF4381	0.88	+0.1
11,948	-		GFF4381	0.88	-0.7
11,948	-		GFF4381	0.88	-0.7
11,948	-		GFF4381	0.88	+1.2
11,948	-		GFF4381	0.88	+0.8
11,948	-		GFF4381	0.88	-0.6
11,948	-		GFF4381	0.88	-0.5
11,948	-		GFF4381	0.88	-0.1
12,030	+				-0.8
12,030	+				+0.1
12,030	+				+0.8
12,030	+				-1.1
12,030	+				-0.4
12,030	+				-1.1
12,030	+				-0.8
12,031	-				-0.5
12,031	-				+0.8
12,031	-				-1.1
12,034	+				-0.3
12,041	+				+0.5
12,041	+				+0.4
12,041	+				+2.2
12,041	+				-0.7
12,041	+				-1.3
12,041	+				-1.2
12,041	+				-0.2
12,041	+				-1.3
12,041	+				-1.0
12,042	-				-1.0
12,042	-				-1.4
12,042	-				-0.5
12,042	-				-0.4
12,233	+				-0.2
12,233	+				-0.7
12,233	+				+0.8
12,234	-				+0.0
12,234	-				-0.0
12,240	+				-0.7
12,240	+				+0.8
12,240	+				-0.2
12,241	-				-1.0
12,276	+				-0.3
12,276	+				-0.8
12,276	+				-0.4
12,276	+				-1.5
12,276	+				+0.2
12,276	+				-0.3
12,276	+				+0.2
12,277	-				-0.2
12,361	-				+0.6
12,375	+				-0.0
12,375	+				-0.6
12,375	+				-0.2
12,375	+				+1.5
12,375	+				-0.1
12,375	+				+1.4
12,375	+				-1.5
12,375	+				-0.0
12,376	-				-0.2
12,376	-				-0.3
12,376	-				-0.0
12,376	-				-0.8
12,376	-				+0.0
12,376	-				-0.7
12,376	-				-0.6
12,376	-				-0.8
12,376	-				-0.9
12,381	+				-0.9
12,381	+				-0.8
12,381	+				+0.2
12,381	+				+0.3
12,381	+				+0.9
12,381	+				+0.2
12,381	+				-0.7
12,382	-				+1.2
12,382	-				-1.8
12,382	-				-0.2
12,382	-				-1.8
12,382	-				+0.7
12,382	-				+0.1
12,382	-				-1.3
12,382	-				-0.5
12,382	-				-0.8
12,420	+		GFF4382	0.11	-0.4
12,420	+		GFF4382	0.11	-0.1
12,420	+		GFF4382	0.11	+0.5
12,420	+		GFF4382	0.11	-0.5
12,420	+		GFF4382	0.11	-0.2
12,421	-		GFF4382	0.11	-0.8
12,421	-		GFF4382	0.11	-0.3
12,421	-		GFF4382	0.11	+0.5
12,421	-		GFF4382	0.11	-0.2
12,421	-		GFF4382	0.11	+0.0
12,421	-		GFF4382	0.11	-0.9
12,676	+		GFF4382	0.44	-1.4
12,676	+		GFF4382	0.44	-0.5
12,676	+		GFF4382	0.44	-0.8
12,676	+		GFF4382	0.44	-1.0
12,676	+		GFF4382	0.44	-1.1
12,676	+		GFF4382	0.44	-0.6
12,676	+		GFF4382	0.44	-0.0
12,676	+		GFF4382	0.44	+0.1
12,677	-		GFF4382	0.45	+0.8
12,677	-		GFF4382	0.45	+0.2
12,677	-		GFF4382	0.45	-1.4
12,747	+		GFF4382	0.54	+0.2
12,747	+		GFF4382	0.54	-2.1
12,747	+		GFF4382	0.54	+0.3
12,747	+		GFF4382	0.54	+0.2
12,747	+		GFF4382	0.54	-0.7
12,747	+		GFF4382	0.54	-0.8
12,747	+		GFF4382	0.54	+0.2
12,747	+		GFF4382	0.54	-0.6
12,748	-		GFF4382	0.54	-0.1
12,748	-		GFF4382	0.54	+1.4
12,748	-		GFF4382	0.54	+0.6
12,748	-		GFF4382	0.54	+0.7
12,748	-		GFF4382	0.54	-0.6
12,748	-		GFF4382	0.54	-0.5
12,748	-		GFF4382	0.54	-0.5
12,753	+		GFF4382	0.54	-0.5
12,753	+		GFF4382	0.54	-1.5
12,753	+		GFF4382	0.54	-0.5
12,753	+		GFF4382	0.54	+0.9
12,753	+		GFF4382	0.54	-0.4
12,753	+		GFF4382	0.54	-0.2
12,754	-		GFF4382	0.55	-1.6
12,754	-		GFF4382	0.55	-0.3
12,754	-		GFF4382	0.55	-0.0
12,754	-		GFF4382	0.55	-1.1
12,754	-		GFF4382	0.55	+0.3
12,789	+		GFF4382	0.59	+0.1
12,896	+		GFF4382	0.73	-0.2
12,896	+		GFF4382	0.73	+0.1
12,896	+		GFF4382	0.73	-0.0
12,896	+		GFF4382	0.73	+0.2
12,896	+		GFF4382	0.73	+0.6
12,896	+		GFF4382	0.73	-0.6
12,896	+		GFF4382	0.73	-0.2
12,896	+		GFF4382	0.73	-0.5
12,896	+		GFF4382	0.73	+0.2
12,896	+		GFF4382	0.73	-0.8
12,896	+		GFF4382	0.73	+0.7
12,896	+		GFF4382	0.73	-0.2
12,896	+		GFF4382	0.73	-0.2
12,897	-		GFF4382	0.73	+0.7
12,897	-		GFF4382	0.73	+0.8
12,897	-		GFF4382	0.73	+0.2
12,897	-		GFF4382	0.73	-0.7
12,897	-		GFF4382	0.73	+0.3
12,897	-		GFF4382	0.73	-0.6
12,897	-		GFF4382	0.73	-0.6
12,897	-		GFF4382	0.73	-0.3
13,062	+				-0.6
13,062	+				-0.2
13,101	+				-0.6
13,173	-				+0.7
13,279	+		GFF4383	0.22	-0.2
13,279	+		GFF4383	0.22	+0.3
13,279	+		GFF4383	0.22	-0.7
13,279	+		GFF4383	0.22	-0.4
13,279	+		GFF4383	0.22	+0.5
13,280	-		GFF4383	0.22	+0.0
13,280	-		GFF4383	0.22	-1.1
13,306	+		GFF4383	0.32	-0.5
13,306	+		GFF4383	0.32	-0.1
13,307	-		GFF4383	0.32	-2.1
13,307	-		GFF4383	0.32	-0.7
13,307	-		GFF4383	0.32	+0.6
13,393	+		GFF4383	0.62	+0.2
13,393	+		GFF4383	0.62	-0.2
13,393	+		GFF4383	0.62	+0.4
13,393	+		GFF4383	0.62	-1.0
13,393	+		GFF4383	0.62	+0.2
13,393	+		GFF4383	0.62	-0.2
13,393	+		GFF4383	0.62	-1.5
13,393	+		GFF4383	0.62	+0.2
13,393	+		GFF4383	0.62	-0.5
13,393	+		GFF4383	0.62	+1.9
13,393	+		GFF4383	0.62	+0.2
13,393	+		GFF4383	0.62	-0.0
13,393	+		GFF4383	0.62	+1.8
13,393	+		GFF4383	0.62	-0.4
13,393	+		GFF4383	0.62	+0.6
13,394	-		GFF4383	0.62	-0.0
13,394	-		GFF4383	0.62	+0.3
13,394	-		GFF4383	0.62	+0.9
13,394	-		GFF4383	0.62	+0.6
13,394	-		GFF4383	0.62	+0.3
13,394	-		GFF4383	0.62	+1.0
13,394	-		GFF4383	0.62	-0.4
13,394	-		GFF4383	0.62	-0.1
13,394	-		GFF4383	0.62	-0.1
13,394	-		GFF4383	0.62	+0.2
13,394	-		GFF4383	0.62	+1.2
13,394	-		GFF4383	0.62	-0.8
13,394	-		GFF4383	0.62	+0.6
13,394	-		GFF4383	0.62	+0.3
13,394	-		GFF4383	0.62	-0.1
13,394	-		GFF4383	0.62	-1.0
13,394	-		GFF4383	0.62	-0.7
13,394	-		GFF4383	0.62	-1.3
13,394	-		GFF4383	0.62	-0.0
13,394	-		GFF4383	0.62	+0.2
13,394	-		GFF4383	0.62	-0.2
13,435	+		GFF4383	0.77	-0.2
13,435	+		GFF4383	0.77	-0.8
13,435	+		GFF4383	0.77	-0.2
13,435	+		GFF4383	0.77	-0.2
13,435	+		GFF4383	0.77	+0.4
13,436	-		GFF4383	0.77	-0.3
13,436	-		GFF4383	0.77	-1.4
13,436	-		GFF4383	0.77	-0.8
13,436	-		GFF4383	0.77	-0.1
13,436	-		GFF4383	0.77	-1.3
13,436	-		GFF4383	0.77	-1.0
13,436	-		GFF4383	0.77	-0.2
13,460	-		GFF4383	0.86	-0.1
13,460	-		GFF4383	0.86	-2.5
13,460	-		GFF4383	0.86	-0.8
13,483	+				-0.3
13,483	+				-0.3
13,483	+				+3.2
13,741	+		GFF4384	0.26	+1.4
13,742	-		GFF4384	0.26	+0.9
13,822	+		GFF4384	0.36	-0.3
13,822	+		GFF4384	0.36	-0.3
13,837	-		GFF4384	0.38	-1.2
13,881	+		GFF4384	0.43	+1.1
13,881	+		GFF4384	0.43	-0.6
13,881	+		GFF4384	0.43	-0.8
13,882	-		GFF4384	0.43	+0.7
13,882	-		GFF4384	0.43	-0.5
13,882	-		GFF4384	0.43	-1.2
13,882	-		GFF4384	0.43	-0.4
14,056	-		GFF4384	0.63	+0.4
14,056	-		GFF4384	0.63	+1.2
14,056	-		GFF4384	0.63	+0.2
14,056	-		GFF4384	0.63	+0.3
14,056	-		GFF4384	0.63	-1.0
14,056	-		GFF4384	0.63	-0.4
14,056	-		GFF4384	0.63	-0.7
14,056	-		GFF4384	0.63	+0.1
14,056	-		GFF4384	0.63	+0.7
14,056	-		GFF4384	0.63	-0.3
14,056	-		GFF4384	0.63	+0.6
14,056	-		GFF4384	0.63	-0.2
14,056	-		GFF4384	0.63	-0.8
14,103	+		GFF4384	0.69	-0.8
14,103	+		GFF4384	0.69	+0.6