Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4256 and GFF4257 are separated by 16 nucleotides GFF4257 and GFF4258 overlap by 8 nucleotides GFF4258 and GFF4259 are separated by 34 nucleotides
GFF4256 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 171,515 to 172,588
GFF4256
GFF4257 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 172,605 to 173,741
GFF4257
GFF4258 - no description, at 173,734 to 174,105
GFF4258
GFF4259 - Transcriptional regulator, DeoR family, at 174,140 to 174,862
GFF4259
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.615 kb on - strand at 171.720 kb on - strand, within GFF4256 at 171.917 kb on + strand, within GFF4256 at 171.917 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 172.092 kb on + strand, within GFF4256 at 172.304 kb on + strand, within GFF4256 at 172.304 kb on + strand, within GFF4256 at 172.364 kb on + strand, within GFF4256 at 172.365 kb on - strand, within GFF4256 at 173.310 kb on + strand, within GFF4257 at 173.310 kb on + strand, within GFF4257 at 173.311 kb on - strand, within GFF4257 at 173.319 kb on + strand, within GFF4257 at 173.320 kb on - strand, within GFF4257 at 173.320 kb on - strand, within GFF4257 at 173.453 kb on - strand, within GFF4257 at 173.490 kb on + strand, within GFF4257 at 173.490 kb on + strand, within GFF4257 at 173.491 kb on - strand, within GFF4257 at 173.739 kb on + strand at 173.739 kb on + strand at 173.740 kb on - strand at 173.740 kb on - strand at 173.861 kb on + strand, within GFF4258 at 173.861 kb on + strand, within GFF4258 at 174.047 kb on + strand, within GFF4258 at 174.048 kb on - strand, within GFF4258 at 174.048 kb on - strand, within GFF4258 at 174.048 kb on - strand, within GFF4258 at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.170 kb on + strand at 174.170 kb on + strand at 174.171 kb on - strand at 174.171 kb on - strand at 174.171 kb on - strand at 174.400 kb on - strand, within GFF4259 at 174.687 kb on + strand, within GFF4259 at 174.688 kb on - strand, within GFF4259
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 171,615 - -0.9 171,720 - GFF4256 0.19 -0.9 171,917 + GFF4256 0.37 -1.1 171,917 + GFF4256 0.37 -1.6 171,995 + GFF4256 0.45 -0.4 171,995 + GFF4256 0.45 +1.3 171,995 + GFF4256 0.45 +0.2 171,996 - GFF4256 0.45 -2.3 171,996 - GFF4256 0.45 +1.4 171,996 - GFF4256 0.45 -0.6 172,092 + GFF4256 0.54 -1.2 172,304 + GFF4256 0.73 +0.1 172,304 + GFF4256 0.73 +0.6 172,364 + GFF4256 0.79 -0.6 172,365 - GFF4256 0.79 -0.9 173,310 + GFF4257 0.62 +0.0 173,310 + GFF4257 0.62 -0.1 173,311 - GFF4257 0.62 -0.2 173,319 + GFF4257 0.63 -0.5 173,320 - GFF4257 0.63 -0.2 173,320 - GFF4257 0.63 +0.5 173,453 - GFF4257 0.75 -0.3 173,490 + GFF4257 0.78 +0.8 173,490 + GFF4257 0.78 -0.2 173,491 - GFF4257 0.78 +0.0 173,739 + +1.8 173,739 + -0.8 173,740 - +0.7 173,740 - +0.4 173,861 + GFF4258 0.34 +0.0 173,861 + GFF4258 0.34 -0.5 174,047 + GFF4258 0.84 -0.3 174,048 - GFF4258 0.84 +1.4 174,048 - GFF4258 0.84 -0.2 174,048 - GFF4258 0.84 +0.0 174,141 + -0.4 174,141 + -1.1 174,141 + -0.0 174,141 + +0.2 174,141 + +0.9 174,141 + -1.4 174,141 + -0.0 174,141 + +1.1 174,141 + +0.5 174,142 - -0.6 174,142 - -0.2 174,142 - +0.2 174,170 + -0.5 174,170 + -0.1 174,171 - +2.4 174,171 - -1.9 174,171 - +0.6 174,400 - GFF4259 0.36 -0.2 174,687 + GFF4259 0.76 -0.1 174,688 - GFF4259 0.76 +1.0
Or see this region's nucleotide sequence