Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4129 and GFF4130 overlap by 4 nucleotides GFF4130 and GFF4131 are separated by 19 nucleotides
GFF4129 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 33,292 to 34,941
GFF4129
GFF4130 - Amidase family protein SACE_5032, at 34,938 to 36,458
GFF4130
GFF4131 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 36,478 to 38,142
GFF4131
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -1
0
1
2 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.226 kb on + strand, within GFF4129 at 34.227 kb on - strand, within GFF4129 at 34.227 kb on - strand, within GFF4129 at 34.247 kb on + strand, within GFF4129 at 34.364 kb on + strand, within GFF4129 at 34.364 kb on + strand, within GFF4129 at 34.607 kb on + strand, within GFF4129 at 34.608 kb on - strand, within GFF4129 at 34.800 kb on - strand at 34.987 kb on + strand at 34.988 kb on - strand at 35.039 kb on - strand at 35.198 kb on - strand, within GFF4130 at 35.480 kb on - strand, within GFF4130 at 35.864 kb on - strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.029 kb on - strand, within GFF4130 at 36.563 kb on + strand at 36.563 kb on + strand at 36.843 kb on - strand, within GFF4131 at 36.843 kb on - strand, within GFF4131 at 36.959 kb on + strand, within GFF4131 at 36.959 kb on + strand, within GFF4131 at 37.077 kb on - strand, within GFF4131 at 37.127 kb on + strand, within GFF4131 at 37.127 kb on + strand, within GFF4131 at 37.127 kb on + strand, within GFF4131 at 37.128 kb on - strand, within GFF4131 at 37.256 kb on + strand, within GFF4131
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 34,226 + GFF4129 0.57 -0.1 34,226 + GFF4129 0.57 -0.5 34,226 + GFF4129 0.57 -1.3 34,226 + GFF4129 0.57 -0.6 34,226 + GFF4129 0.57 -0.1 34,227 - GFF4129 0.57 -0.2 34,227 - GFF4129 0.57 -0.2 34,247 + GFF4129 0.58 +0.2 34,364 + GFF4129 0.65 +0.1 34,364 + GFF4129 0.65 -0.3 34,607 + GFF4129 0.80 -0.1 34,608 - GFF4129 0.80 +0.5 34,800 - -0.8 34,987 + +1.2 34,988 - -0.2 35,039 - -0.8 35,198 - GFF4130 0.17 -0.2 35,480 - GFF4130 0.36 -1.0 35,864 - GFF4130 0.61 -1.0 36,028 + GFF4130 0.72 -0.6 36,028 + GFF4130 0.72 -0.5 36,028 + GFF4130 0.72 -0.7 36,028 + GFF4130 0.72 -0.6 36,028 + GFF4130 0.72 +0.9 36,029 - GFF4130 0.72 -0.3 36,563 + +0.6 36,563 + +2.4 36,843 - GFF4131 0.22 +0.5 36,843 - GFF4131 0.22 +0.2 36,959 + GFF4131 0.29 +0.5 36,959 + GFF4131 0.29 -1.6 37,077 - GFF4131 0.36 +0.1 37,127 + GFF4131 0.39 -1.3 37,127 + GFF4131 0.39 -1.4 37,127 + GFF4131 0.39 -1.0 37,128 - GFF4131 0.39 +0.1 37,256 + GFF4131 0.47 +0.8
Or see this region's nucleotide sequence