Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF394 and GFF395 are separated by 53 nucleotides GFF395 and GFF396 overlap by 11 nucleotides GFF396 and GFF397 are separated by 41 nucleotides
GFF394 - Putative amidase R03093, at 425,827 to 427,152
GFF394
GFF395 - D-amino acid dehydrogenase (EC 1.4.99.6), at 427,206 to 428,459
GFF395
GFF396 - hypothetical protein, at 428,449 to 428,877
GFF396
GFF397 - NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136), at 428,919 to 430,379
GFF397
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 426.206 kb on - strand, within GFF394 at 426.206 kb on - strand, within GFF394 at 426.322 kb on - strand, within GFF394 at 426.532 kb on + strand, within GFF394 at 426.532 kb on + strand, within GFF394 at 426.532 kb on + strand, within GFF394 at 426.532 kb on + strand, within GFF394 at 426.532 kb on + strand, within GFF394 at 426.533 kb on - strand, within GFF394 at 426.533 kb on - strand, within GFF394 at 426.533 kb on - strand, within GFF394 at 426.533 kb on - strand, within GFF394 at 426.533 kb on - strand, within GFF394 at 426.597 kb on - strand, within GFF394 at 426.757 kb on + strand, within GFF394 at 426.771 kb on - strand, within GFF394 at 426.771 kb on - strand, within GFF394 at 426.771 kb on - strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.814 kb on + strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 426.815 kb on - strand, within GFF394 at 427.116 kb on - strand at 427.139 kb on + strand at 427.150 kb on + strand at 427.150 kb on + strand at 427.151 kb on - strand at 427.167 kb on - strand at 427.167 kb on - strand at 427.170 kb on - strand at 427.170 kb on - strand at 427.170 kb on - strand at 427.191 kb on + strand at 427.191 kb on + strand at 427.191 kb on + strand at 427.191 kb on + strand at 427.192 kb on - strand at 427.192 kb on - strand at 427.196 kb on - strand at 427.196 kb on - strand at 427.196 kb on - strand at 427.356 kb on + strand, within GFF395 at 427.356 kb on + strand, within GFF395 at 427.356 kb on + strand, within GFF395 at 427.356 kb on + strand, within GFF395 at 427.356 kb on + strand, within GFF395 at 427.356 kb on + strand, within GFF395 at 427.356 kb on + strand, within GFF395 at 427.357 kb on - strand, within GFF395 at 427.357 kb on - strand, within GFF395 at 427.506 kb on + strand, within GFF395 at 427.506 kb on + strand, within GFF395 at 427.506 kb on + strand, within GFF395 at 427.506 kb on + strand, within GFF395 at 427.506 kb on + strand, within GFF395 at 427.506 kb on + strand, within GFF395 at 427.507 kb on - strand, within GFF395 at 427.507 kb on - strand, within GFF395 at 427.507 kb on - strand, within GFF395 at 427.507 kb on - strand, within GFF395 at 427.507 kb on - strand, within GFF395 at 427.507 kb on - strand, within GFF395 at 427.507 kb on - strand, within GFF395 at 427.507 kb on - strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.545 kb on + strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.546 kb on - strand, within GFF395 at 427.593 kb on + strand, within GFF395 at 427.593 kb on + strand, within GFF395 at 427.593 kb on + strand, within GFF395 at 427.593 kb on + strand, within GFF395 at 427.593 kb on + strand, within GFF395 at 427.593 kb on + strand, within GFF395 at 427.594 kb on - strand, within GFF395 at 427.594 kb on - strand, within GFF395 at 427.594 kb on - strand, within GFF395 at 427.594 kb on - strand, within GFF395 at 427.594 kb on - strand, within GFF395 at 427.611 kb on + strand, within GFF395 at 427.611 kb on + strand, within GFF395 at 427.611 kb on + strand, within GFF395 at 427.612 kb on - strand, within GFF395 at 427.612 kb on - strand, within GFF395 at 427.935 kb on + strand, within GFF395 at 427.935 kb on + strand, within GFF395 at 427.935 kb on + strand, within GFF395 at 427.935 kb on + strand, within GFF395 at 428.019 kb on + strand, within GFF395 at 428.020 kb on - strand, within GFF395 at 428.091 kb on + strand, within GFF395 at 428.091 kb on + strand, within GFF395 at 428.091 kb on + strand, within GFF395 at 428.091 kb on + strand, within GFF395 at 428.091 kb on + strand, within GFF395 at 428.091 kb on + strand, within GFF395 at 428.091 kb on + strand, within GFF395 at 428.091 kb on + strand, within GFF395 at 428.091 kb on + strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.092 kb on - strand, within GFF395 at 428.196 kb on + strand, within GFF395 at 428.196 kb on + strand, within GFF395 at 428.196 kb on + strand, within GFF395 at 428.196 kb on + strand, within GFF395 at 428.196 kb on + strand, within GFF395 at 428.196 kb on + strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.197 kb on - strand, within GFF395 at 428.314 kb on + strand, within GFF395 at 428.457 kb on + strand at 428.457 kb on + strand at 428.457 kb on + strand at 428.457 kb on + strand at 428.457 kb on + strand at 428.457 kb on + strand at 428.458 kb on - strand at 428.825 kb on - strand, within GFF396 at 428.888 kb on + strand at 428.888 kb on + strand at 428.888 kb on + strand at 428.888 kb on + strand at 428.888 kb on + strand at 428.889 kb on - strand at 428.889 kb on - strand at 428.889 kb on - strand at 428.889 kb on - strand at 428.889 kb on - strand at 428.889 kb on - strand at 428.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 426,206 - GFF394 0.29 -0.7 426,206 - GFF394 0.29 +0.5 426,322 - GFF394 0.37 -0.2 426,532 + GFF394 0.53 -1.1 426,532 + GFF394 0.53 +0.4 426,532 + GFF394 0.53 -0.1 426,532 + GFF394 0.53 -1.1 426,532 + GFF394 0.53 +0.6 426,533 - GFF394 0.53 +1.3 426,533 - GFF394 0.53 -1.3 426,533 - GFF394 0.53 -0.3 426,533 - GFF394 0.53 -0.1 426,533 - GFF394 0.53 +0.2 426,597 - GFF394 0.58 -1.4 426,757 + GFF394 0.70 -0.1 426,771 - GFF394 0.71 -0.9 426,771 - GFF394 0.71 +0.2 426,771 - GFF394 0.71 +0.3 426,814 + GFF394 0.74 -0.8 426,814 + GFF394 0.74 -0.8 426,814 + GFF394 0.74 -0.1 426,814 + GFF394 0.74 +0.6 426,814 + GFF394 0.74 +0.0 426,814 + GFF394 0.74 -0.3 426,814 + GFF394 0.74 +2.6 426,814 + GFF394 0.74 -1.3 426,814 + GFF394 0.74 +0.7 426,814 + GFF394 0.74 -1.4 426,814 + GFF394 0.74 +1.6 426,814 + GFF394 0.74 +0.2 426,814 + GFF394 0.74 -1.7 426,814 + GFF394 0.74 -0.4 426,814 + GFF394 0.74 +0.2 426,814 + GFF394 0.74 +0.9 426,814 + GFF394 0.74 +0.4 426,815 - GFF394 0.75 +0.6 426,815 - GFF394 0.75 -0.7 426,815 - GFF394 0.75 +0.1 426,815 - GFF394 0.75 -1.5 426,815 - GFF394 0.75 +2.9 426,815 - GFF394 0.75 +0.2 426,815 - GFF394 0.75 +0.4 426,815 - GFF394 0.75 -1.0 426,815 - GFF394 0.75 -0.0 426,815 - GFF394 0.75 -1.8 426,815 - GFF394 0.75 +0.9 426,815 - GFF394 0.75 +1.2 426,815 - GFF394 0.75 -1.1 426,815 - GFF394 0.75 -0.4 426,815 - GFF394 0.75 -0.3 426,815 - GFF394 0.75 -1.1 426,815 - GFF394 0.75 -1.2 426,815 - GFF394 0.75 -0.6 426,815 - GFF394 0.75 +0.7 426,815 - GFF394 0.75 -0.1 426,815 - GFF394 0.75 +0.1 426,815 - GFF394 0.75 -0.6 426,815 - GFF394 0.75 +0.1 426,815 - GFF394 0.75 -1.0 426,815 - GFF394 0.75 +2.2 427,116 - +0.6 427,139 + +1.2 427,150 + +0.2 427,150 + +0.3 427,151 - +0.9 427,167 - +0.2 427,167 - -1.0 427,170 - +0.6 427,170 - +0.2 427,170 - -0.5 427,191 + +0.4 427,191 + -1.6 427,191 + -0.4 427,191 + +0.2 427,192 - -0.6 427,192 - -2.3 427,196 - -0.6 427,196 - +0.2 427,196 - -0.6 427,356 + GFF395 0.12 +0.6 427,356 + GFF395 0.12 -0.8 427,356 + GFF395 0.12 +0.2 427,356 + GFF395 0.12 -0.2 427,356 + GFF395 0.12 -0.4 427,356 + GFF395 0.12 -0.8 427,356 + GFF395 0.12 -0.4 427,357 - GFF395 0.12 -0.7 427,357 - GFF395 0.12 +0.8 427,506 + GFF395 0.24 -0.0 427,506 + GFF395 0.24 -1.0 427,506 + GFF395 0.24 -0.8 427,506 + GFF395 0.24 -0.8 427,506 + GFF395 0.24 -0.6 427,506 + GFF395 0.24 -0.1 427,507 - GFF395 0.24 -0.1 427,507 - GFF395 0.24 -0.2 427,507 - GFF395 0.24 +0.4 427,507 - GFF395 0.24 +1.2 427,507 - GFF395 0.24 -0.9 427,507 - GFF395 0.24 -0.0 427,507 - GFF395 0.24 -1.1 427,507 - GFF395 0.24 -0.6 427,545 + GFF395 0.27 -0.1 427,545 + GFF395 0.27 -1.1 427,545 + GFF395 0.27 -0.1 427,545 + GFF395 0.27 -0.2 427,545 + GFF395 0.27 +0.0 427,545 + GFF395 0.27 +0.1 427,545 + GFF395 0.27 -0.9 427,545 + GFF395 0.27 -1.2 427,545 + GFF395 0.27 +0.5 427,545 + GFF395 0.27 -0.8 427,545 + GFF395 0.27 +1.2 427,545 + GFF395 0.27 +0.5 427,546 - GFF395 0.27 -0.4 427,546 - GFF395 0.27 +0.5 427,546 - GFF395 0.27 +0.5 427,546 - GFF395 0.27 +2.2 427,546 - GFF395 0.27 +0.6 427,546 - GFF395 0.27 +0.1 427,546 - GFF395 0.27 +0.0 427,546 - GFF395 0.27 +0.4 427,546 - GFF395 0.27 +1.0 427,546 - GFF395 0.27 -0.6 427,546 - GFF395 0.27 +0.2 427,546 - GFF395 0.27 -0.5 427,593 + GFF395 0.31 -0.6 427,593 + GFF395 0.31 +1.4 427,593 + GFF395 0.31 -0.5 427,593 + GFF395 0.31 -0.3 427,593 + GFF395 0.31 -0.7 427,593 + GFF395 0.31 +0.9 427,594 - GFF395 0.31 -0.9 427,594 - GFF395 0.31 -1.1 427,594 - GFF395 0.31 +2.6 427,594 - GFF395 0.31 +0.2 427,594 - GFF395 0.31 -2.0 427,611 + GFF395 0.32 -0.2 427,611 + GFF395 0.32 -0.6 427,611 + GFF395 0.32 +1.2 427,612 - GFF395 0.32 +0.5 427,612 - GFF395 0.32 -1.8 427,935 + GFF395 0.58 +1.0 427,935 + GFF395 0.58 +0.1 427,935 + GFF395 0.58 +0.2 427,935 + GFF395 0.58 +0.2 428,019 + GFF395 0.65 -0.1 428,020 - GFF395 0.65 -1.2 428,091 + GFF395 0.71 -0.8 428,091 + GFF395 0.71 -0.6 428,091 + GFF395 0.71 -0.3 428,091 + GFF395 0.71 -0.8 428,091 + GFF395 0.71 +2.2 428,091 + GFF395 0.71 -2.1 428,091 + GFF395 0.71 -0.6 428,091 + GFF395 0.71 -0.0 428,091 + GFF395 0.71 +0.6 428,092 - GFF395 0.71 -0.9 428,092 - GFF395 0.71 -0.6 428,092 - GFF395 0.71 -1.0 428,092 - GFF395 0.71 +1.0 428,092 - GFF395 0.71 -1.4 428,092 - GFF395 0.71 +0.7 428,092 - GFF395 0.71 +1.1 428,092 - GFF395 0.71 +0.7 428,092 - GFF395 0.71 -2.6 428,092 - GFF395 0.71 -1.0 428,092 - GFF395 0.71 -0.3 428,092 - GFF395 0.71 -0.1 428,196 + GFF395 0.79 -1.9 428,196 + GFF395 0.79 -0.8 428,196 + GFF395 0.79 -0.7 428,196 + GFF395 0.79 -0.8 428,196 + GFF395 0.79 -0.3 428,196 + GFF395 0.79 -0.6 428,197 - GFF395 0.79 -1.1 428,197 - GFF395 0.79 -1.1 428,197 - GFF395 0.79 -0.3 428,197 - GFF395 0.79 -0.6 428,197 - GFF395 0.79 -1.1 428,197 - GFF395 0.79 -0.2 428,197 - GFF395 0.79 +0.0 428,197 - GFF395 0.79 +0.5 428,197 - GFF395 0.79 -0.3 428,197 - GFF395 0.79 +0.2 428,197 - GFF395 0.79 -0.6 428,314 + GFF395 0.88 +1.6 428,457 + +1.5 428,457 + -0.3 428,457 + -0.3 428,457 + +0.9 428,457 + +0.1 428,457 + -0.1 428,458 - -1.6 428,825 - GFF396 0.88 -0.2 428,888 + +0.2 428,888 + -1.1 428,888 + -0.3 428,888 + -0.5 428,888 + -0.1 428,889 - -1.0 428,889 - -0.1 428,889 - -0.9 428,889 - -0.8 428,889 - -0.1 428,889 - -0.5 428,889 - +1.1
Or see this region's nucleotide sequence