Strain Fitness in Variovorax sp. SCN45 around GFF3913

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3912 and GFF3913 are separated by 8 nucleotidesGFF3913 and GFF3914 are separated by 19 nucleotides GFF3912 - Ferrous iron transport permease EfeU, at 117,743 to 118,579 GFF3912 GFF3913 - Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain, at 118,588 to 119,778 GFF3913 GFF3914 - Ferrous iron transport peroxidase EfeB, at 119,798 to 121,123 GFF3914 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 117.597 kb on + strandat 117.597 kb on + strandat 117.597 kb on + strandat 117.597 kb on + strandat 117.597 kb on + strandat 117.597 kb on + strandat 117.597 kb on + strandat 117.597 kb on + strandat 117.597 kb on + strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.598 kb on - strandat 117.601 kb on + strandat 117.601 kb on + strandat 117.601 kb on + strandat 117.611 kb on + strandat 117.721 kb on + strandat 117.721 kb on + strandat 117.722 kb on - strandat 117.722 kb on - strandat 117.722 kb on - strandat 117.722 kb on - strandat 117.722 kb on - strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.815 kb on + strandat 117.816 kb on - strandat 117.816 kb on - strandat 117.816 kb on - strandat 118.461 kb on - strand, within GFF3912at 118.461 kb on - strand, within GFF3912at 118.496 kb on + strandat 118.496 kb on + strandat 118.497 kb on - strandat 118.693 kb on + strandat 118.693 kb on + strandat 118.693 kb on + strandat 118.693 kb on + strandat 118.693 kb on + strandat 118.694 kb on - strandat 118.694 kb on - strandat 118.694 kb on - strandat 118.694 kb on - strandat 119.047 kb on + strand, within GFF3913at 119.047 kb on + strand, within GFF3913at 119.047 kb on + strand, within GFF3913at 119.047 kb on + strand, within GFF3913at 119.047 kb on + strand, within GFF3913at 119.047 kb on + strand, within GFF3913at 119.047 kb on + strand, within GFF3913at 119.047 kb on + strand, within GFF3913at 119.047 kb on + strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.048 kb on - strand, within GFF3913at 119.068 kb on + strand, within GFF3913at 119.068 kb on + strand, within GFF3913at 119.068 kb on + strand, within GFF3913at 119.069 kb on - strand, within GFF3913at 119.069 kb on - strand, within GFF3913at 119.170 kb on + strand, within GFF3913at 119.170 kb on + strand, within GFF3913at 119.170 kb on + strand, within GFF3913at 119.170 kb on + strand, within GFF3913at 119.170 kb on + strand, within GFF3913at 119.170 kb on + strand, within GFF3913at 119.170 kb on + strand, within GFF3913at 119.170 kb on + strand, within GFF3913at 119.171 kb on - strand, within GFF3913at 119.171 kb on - strand, within GFF3913at 119.171 kb on - strand, within GFF3913at 119.171 kb on - strand, within GFF3913at 119.171 kb on - strand, within GFF3913at 119.171 kb on - strand, within GFF3913at 119.171 kb on - strand, within GFF3913at 119.191 kb on + strand, within GFF3913at 119.191 kb on + strand, within GFF3913at 119.191 kb on + strand, within GFF3913at 119.191 kb on + strand, within GFF3913at 119.191 kb on + strand, within GFF3913at 119.192 kb on - strand, within GFF3913at 119.192 kb on - strand, within GFF3913at 119.192 kb on - strand, within GFF3913at 119.260 kb on + strand, within GFF3913at 119.261 kb on - strand, within GFF3913at 119.314 kb on + strand, within GFF3913at 119.314 kb on + strand, within GFF3913at 119.315 kb on - strand, within GFF3913at 119.323 kb on + strand, within GFF3913at 119.323 kb on + strand, within GFF3913at 119.323 kb on + strand, within GFF3913at 119.324 kb on - strand, within GFF3913at 119.324 kb on - strand, within GFF3913at 119.324 kb on - strand, within GFF3913at 119.324 kb on - strand, within GFF3913at 119.324 kb on - strand, within GFF3913at 119.536 kb on + strand, within GFF3913at 119.536 kb on + strand, within GFF3913at 119.536 kb on + strand, within GFF3913at 119.536 kb on + strand, within GFF3913at 119.536 kb on + strand, within GFF3913at 119.536 kb on + strand, within GFF3913at 119.536 kb on + strand, within GFF3913at 119.536 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.537 kb on - strand, within GFF3913at 119.538 kb on - strand, within GFF3913at 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.781 kb on + strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 119.782 kb on - strandat 120.080 kb on + strand, within GFF3914at 120.080 kb on + strand, within GFF3914at 120.080 kb on + strand, within GFF3914at 120.080 kb on + strand, within GFF3914at 120.080 kb on + strand, within GFF3914at 120.081 kb on - strand, within GFF3914at 120.081 kb on - strand, within GFF3914at 120.081 kb on - strand, within GFF3914at 120.081 kb on - strand, within GFF3914at 120.081 kb on - strand, within GFF3914at 120.081 kb on - strand, within GFF3914at 120.653 kb on + strand, within GFF3914at 120.653 kb on + strand, within GFF3914at 120.653 kb on + strand, within GFF3914at 120.653 kb on + strand, within GFF3914at 120.654 kb on - strand, within GFF3914at 120.654 kb on - strand, within GFF3914

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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117,597 + +0.1
117,597 + -0.0
117,597 + -0.8
117,597 + -0.7
117,597 + -0.8
117,597 + +0.2
117,597 + -0.2
117,597 + +0.7
117,597 + -0.5
117,598 - -0.2
117,598 - -1.2
117,598 - -0.0
117,598 - +0.2
117,598 - -1.2
117,598 - +0.9
117,598 - -1.2
117,598 - +0.7
117,598 - -0.7
117,598 - -1.6
117,598 - -0.4
117,598 - -2.2
117,598 - -1.3
117,598 - -1.0
117,598 - -0.9
117,598 - +0.8
117,601 + +0.0
117,601 + -0.2
117,601 + -0.4
117,611 + -0.8
117,721 + -0.4
117,721 + -0.2
117,722 - -0.8
117,722 - -1.7
117,722 - +0.4
117,722 - -0.4
117,722 - -1.4
117,815 + -0.2
117,815 + -0.7
117,815 + -0.3
117,815 + -0.6
117,815 + +0.1
117,815 + +1.0
117,815 + -0.6
117,815 + -0.4
117,815 + -1.1
117,815 + +0.0
117,815 + -0.6
117,815 + -0.3
117,815 + +0.2
117,816 - -0.9
117,816 - -1.2
117,816 - -0.6
118,461 - GFF3912 0.86 -1.3
118,461 - GFF3912 0.86 -1.5
118,496 + -0.1
118,496 + -1.0
118,497 - -1.7
118,693 + +0.3
118,693 + -0.5
118,693 + +0.9
118,693 + -1.1
118,693 + -0.8
118,694 - -1.1
118,694 - -0.2
118,694 - -1.5
118,694 - -0.3
119,047 + GFF3913 0.39 +3.1
119,047 + GFF3913 0.39 +0.6
119,047 + GFF3913 0.39 -0.6
119,047 + GFF3913 0.39 -1.0
119,047 + GFF3913 0.39 -1.0
119,047 + GFF3913 0.39 -1.2
119,047 + GFF3913 0.39 -0.7
119,047 + GFF3913 0.39 -0.6
119,047 + GFF3913 0.39 -0.4
119,048 - GFF3913 0.39 -0.2
119,048 - GFF3913 0.39 -0.4
119,048 - GFF3913 0.39 -0.0
119,048 - GFF3913 0.39 +0.5
119,048 - GFF3913 0.39 -0.4
119,048 - GFF3913 0.39 +0.7
119,048 - GFF3913 0.39 -1.6
119,048 - GFF3913 0.39 +1.0
119,048 - GFF3913 0.39 +0.6
119,048 - GFF3913 0.39 -0.1
119,068 + GFF3913 0.40 -0.8
119,068 + GFF3913 0.40 -0.7
119,068 + GFF3913 0.40 +2.2
119,069 - GFF3913 0.40 +2.0
119,069 - GFF3913 0.40 -0.8
119,170 + GFF3913 0.49 -1.6
119,170 + GFF3913 0.49 +0.2
119,170 + GFF3913 0.49 -0.3
119,170 + GFF3913 0.49 -0.3
119,170 + GFF3913 0.49 -0.4
119,170 + GFF3913 0.49 -1.5
119,170 + GFF3913 0.49 +0.1
119,170 + GFF3913 0.49 -0.9
119,171 - GFF3913 0.49 +0.7
119,171 - GFF3913 0.49 -0.3
119,171 - GFF3913 0.49 -0.5
119,171 - GFF3913 0.49 -0.2
119,171 - GFF3913 0.49 -1.3
119,171 - GFF3913 0.49 -1.0
119,171 - GFF3913 0.49 -1.2
119,191 + GFF3913 0.51 -1.2
119,191 + GFF3913 0.51 +0.7
119,191 + GFF3913 0.51 +0.6
119,191 + GFF3913 0.51 +1.0
119,191 + GFF3913 0.51 -0.5
119,192 - GFF3913 0.51 -0.3
119,192 - GFF3913 0.51 +0.4
119,192 - GFF3913 0.51 -2.2
119,260 + GFF3913 0.56 +0.4
119,261 - GFF3913 0.57 -0.9
119,314 + GFF3913 0.61 +0.4
119,314 + GFF3913 0.61 -1.7
119,315 - GFF3913 0.61 -1.2
119,323 + GFF3913 0.62 -0.0
119,323 + GFF3913 0.62 -1.6
119,323 + GFF3913 0.62 +0.1
119,324 - GFF3913 0.62 -0.9
119,324 - GFF3913 0.62 -0.1
119,324 - GFF3913 0.62 -1.4
119,324 - GFF3913 0.62 +0.4
119,324 - GFF3913 0.62 +1.4
119,536 + GFF3913 0.80 -0.7
119,536 + GFF3913 0.80 -0.5
119,536 + GFF3913 0.80 +1.0
119,536 + GFF3913 0.80 -0.4
119,536 + GFF3913 0.80 -1.0
119,536 + GFF3913 0.80 +0.4
119,536 + GFF3913 0.80 +1.5
119,536 - GFF3913 0.80 +0.3
119,537 - GFF3913 0.80 -0.4
119,537 - GFF3913 0.80 -1.5
119,537 - GFF3913 0.80 -0.8
119,537 - GFF3913 0.80 -0.8
119,537 - GFF3913 0.80 -0.0
119,537 - GFF3913 0.80 -0.0
119,537 - GFF3913 0.80 -0.4
119,537 - GFF3913 0.80 -2.1
119,537 - GFF3913 0.80 -0.4
119,537 - GFF3913 0.80 +0.2
119,537 - GFF3913 0.80 -0.7
119,537 - GFF3913 0.80 -1.6
119,538 - GFF3913 0.80 -0.4
119,781 + +0.2
119,781 + -0.4
119,781 + +0.3
119,781 + -0.6
119,781 + -1.5
119,781 + -0.5
119,781 + -0.1
119,781 + +0.4
119,781 + -0.6
119,781 + -0.0
119,781 + -1.0
119,781 + -0.4
119,781 + -0.2
119,781 + -0.8
119,781 + +0.4
119,782 - -0.8
119,782 - -0.0
119,782 - +2.0
119,782 - -0.7
119,782 - +0.4
119,782 - -0.3
119,782 - +1.6
119,782 - -0.4
119,782 - -0.5
119,782 - +0.7
119,782 - +0.6
119,782 - +0.5
119,782 - -1.8
119,782 - +0.2
119,782 - -0.3
119,782 - -0.6
119,782 - +0.4
119,782 - +0.3
120,080 + GFF3914 0.21 -0.6
120,080 + GFF3914 0.21 -1.2
120,080 + GFF3914 0.21 -0.7
120,080 + GFF3914 0.21 -0.5
120,080 + GFF3914 0.21 +1.7
120,081 - GFF3914 0.21 -0.6
120,081 - GFF3914 0.21 +0.4
120,081 - GFF3914 0.21 -0.8
120,081 - GFF3914 0.21 +0.8
120,081 - GFF3914 0.21 +0.5
120,081 - GFF3914 0.21 -0.1
120,653 + GFF3914 0.64 -0.3
120,653 + GFF3914 0.64 +0.1
120,653 + GFF3914 0.64 +0.8
120,653 + GFF3914 0.64 +0.5
120,654 - GFF3914 0.65 -1.0
120,654 - GFF3914 0.65 -1.1

Or see this region's nucleotide sequence