Strain Fitness in Variovorax sp. SCN45 around GFF375

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF373 and GFF374 are separated by 10 nucleotidesGFF374 and GFF375 are separated by 66 nucleotidesGFF375 and GFF376 are separated by 8 nucleotides GFF373 - Probable transmembrane protein, at 403,889 to 404,305 GFF373 GFF374 - Transcription elongation factor GreA, at 404,316 to 404,792 GFF374 GFF375 - hypothetical protein, at 404,859 to 405,728 GFF375 GFF376 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 405,737 to 408,985 GFF376 Position (kb) 404 405 406Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 403.886 kb on - strandat 403.886 kb on - strandat 403.886 kb on - strandat 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.023 kb on - strand, within GFF373at 404.023 kb on - strand, within GFF373at 404.323 kb on + strandat 404.323 kb on + strandat 404.323 kb on + strandat 404.324 kb on - strandat 404.324 kb on - strandat 404.344 kb on + strandat 404.470 kb on - strand, within GFF374at 404.470 kb on - strand, within GFF374at 404.479 kb on + strand, within GFF374at 404.479 kb on + strand, within GFF374at 404.479 kb on + strand, within GFF374at 404.650 kb on + strand, within GFF374at 404.650 kb on + strand, within GFF374at 404.651 kb on - strand, within GFF374at 404.808 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.921 kb on - strandat 404.921 kb on - strandat 404.921 kb on - strandat 404.921 kb on - strandat 404.921 kb on - strandat 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 405.061 kb on + strand, within GFF375at 405.061 kb on + strand, within GFF375at 405.061 kb on + strand, within GFF375at 405.062 kb on - strand, within GFF375at 405.062 kb on - strand, within GFF375at 405.112 kb on + strand, within GFF375at 405.113 kb on - strand, within GFF375at 405.175 kb on + strand, within GFF375at 405.175 kb on + strand, within GFF375at 405.175 kb on + strand, within GFF375at 405.175 kb on + strand, within GFF375at 405.176 kb on - strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.385 kb on + strand, within GFF375at 405.386 kb on - strand, within GFF375at 405.418 kb on + strand, within GFF375at 405.418 kb on + strand, within GFF375at 405.418 kb on + strand, within GFF375at 405.418 kb on + strand, within GFF375at 405.418 kb on + strand, within GFF375at 405.419 kb on - strand, within GFF375at 405.419 kb on - strand, within GFF375at 405.419 kb on - strand, within GFF375at 405.419 kb on - strand, within GFF375at 405.419 kb on - strand, within GFF375at 405.419 kb on - strand, within GFF375at 405.419 kb on - strand, within GFF375at 405.419 kb on - strand, within GFF375at 405.631 kb on + strand, within GFF375at 405.631 kb on + strand, within GFF375at 405.631 kb on + strand, within GFF375at 405.631 kb on + strand, within GFF375at 405.631 kb on + strand, within GFF375at 405.631 kb on + strand, within GFF375at 405.632 kb on - strand, within GFF375at 405.632 kb on - strand, within GFF375at 405.632 kb on - strand, within GFF375at 405.632 kb on - strand, within GFF375at 405.632 kb on - strand, within GFF375at 405.632 kb on - strand, within GFF375at 405.632 kb on - strand, within GFF375at 405.632 kb on - strand, within GFF375at 405.632 kb on - strand, within GFF375

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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403,886 - +0.4
403,886 - -0.5
403,886 - -1.0
403,953 + GFF373 0.15 -0.2
403,953 + GFF373 0.15 +0.2
403,953 + GFF373 0.15 -0.3
403,953 + GFF373 0.15 +0.3
403,953 + GFF373 0.15 -0.1
403,953 + GFF373 0.15 -0.3
403,953 + GFF373 0.15 +1.2
403,953 + GFF373 0.15 -0.1
403,953 + GFF373 0.15 -0.4
403,953 + GFF373 0.15 +0.8
403,953 + GFF373 0.15 +0.0
403,953 + GFF373 0.15 -1.1
403,954 - GFF373 0.16 -0.5
403,954 - GFF373 0.16 +0.3
403,954 - GFF373 0.16 +0.5
403,954 - GFF373 0.16 -0.7
403,954 - GFF373 0.16 -0.2
403,954 - GFF373 0.16 +0.4
403,954 - GFF373 0.16 -0.1
403,954 - GFF373 0.16 +1.8
403,954 - GFF373 0.16 -0.4
403,954 - GFF373 0.16 +0.4
403,954 - GFF373 0.16 +1.0
403,954 - GFF373 0.16 +0.1
403,954 - GFF373 0.16 -0.5
403,954 - GFF373 0.16 -1.2
404,022 + GFF373 0.32 -0.3
404,022 + GFF373 0.32 +0.4
404,022 + GFF373 0.32 -0.4
404,022 + GFF373 0.32 -0.8
404,022 + GFF373 0.32 +0.7
404,022 + GFF373 0.32 -0.2
404,022 + GFF373 0.32 -1.3
404,022 + GFF373 0.32 +0.3
404,022 + GFF373 0.32 +0.3
404,023 - GFF373 0.32 -0.3
404,023 - GFF373 0.32 +1.1
404,323 + -0.1
404,323 + +0.2
404,323 + +0.2
404,324 - -0.5
404,324 - -0.9
404,344 + -0.4
404,470 - GFF374 0.32 +0.8
404,470 - GFF374 0.32 -1.9
404,479 + GFF374 0.34 -0.2
404,479 + GFF374 0.34 +0.2
404,479 + GFF374 0.34 -0.6
404,650 + GFF374 0.70 +0.9
404,650 + GFF374 0.70 -1.3
404,651 - GFF374 0.70 -0.4
404,808 + +0.2
404,920 + -0.5
404,920 + -0.1
404,920 + -0.8
404,920 + -2.1
404,920 + +0.6
404,920 + +1.6
404,920 + +0.4
404,920 + +0.9
404,920 + -2.2
404,920 + -1.4
404,921 - +0.8
404,921 - -2.3
404,921 - -2.0
404,921 - -0.6
404,921 - -0.8
404,962 + GFF375 0.12 -0.1
404,962 + GFF375 0.12 +1.2
404,962 + GFF375 0.12 +0.2
404,962 + GFF375 0.12 -1.1
404,962 + GFF375 0.12 +0.1
404,962 + GFF375 0.12 -0.4
404,962 + GFF375 0.12 +0.2
404,962 + GFF375 0.12 -0.5
404,962 + GFF375 0.12 -1.5
404,962 + GFF375 0.12 -1.4
404,962 + GFF375 0.12 -0.3
404,962 + GFF375 0.12 -0.4
404,962 + GFF375 0.12 +0.4
404,962 + GFF375 0.12 +0.6
404,962 + GFF375 0.12 -1.4
404,962 + GFF375 0.12 +0.3
404,962 + GFF375 0.12 +0.9
404,962 + GFF375 0.12 -1.6
404,962 + GFF375 0.12 -1.7
404,962 + GFF375 0.12 +1.2
404,962 + GFF375 0.12 -0.4
404,962 + GFF375 0.12 +1.2
404,962 + GFF375 0.12 -0.5
404,962 + GFF375 0.12 +0.2
404,963 - GFF375 0.12 -2.1
404,963 - GFF375 0.12 -1.3
404,963 - GFF375 0.12 +0.2
404,963 - GFF375 0.12 +0.7
404,963 - GFF375 0.12 +0.2
404,963 - GFF375 0.12 -0.5
404,963 - GFF375 0.12 -1.0
404,963 - GFF375 0.12 -0.9
404,963 - GFF375 0.12 +0.0
404,963 - GFF375 0.12 -1.6
404,963 - GFF375 0.12 -1.5
404,963 - GFF375 0.12 -0.6
404,963 - GFF375 0.12 +0.0
404,963 - GFF375 0.12 -0.6
404,963 - GFF375 0.12 -1.8
404,963 - GFF375 0.12 -1.7
404,963 - GFF375 0.12 +0.9
404,963 - GFF375 0.12 +0.5
404,963 - GFF375 0.12 +0.1
404,963 - GFF375 0.12 -1.9
404,963 - GFF375 0.12 +0.9
404,963 - GFF375 0.12 -0.8
404,963 - GFF375 0.12 +0.3
404,963 - GFF375 0.12 -1.3
405,061 + GFF375 0.23 +0.8
405,061 + GFF375 0.23 -2.9
405,061 + GFF375 0.23 -0.4
405,062 - GFF375 0.23 -2.1
405,062 - GFF375 0.23 +0.2
405,112 + GFF375 0.29 -0.1
405,113 - GFF375 0.29 -0.0
405,175 + GFF375 0.36 -1.4
405,175 + GFF375 0.36 +0.9
405,175 + GFF375 0.36 -0.8
405,175 + GFF375 0.36 -1.2
405,176 - GFF375 0.36 -0.4
405,295 + GFF375 0.50 -0.5
405,295 + GFF375 0.50 -1.5
405,295 + GFF375 0.50 -0.4
405,295 + GFF375 0.50 -0.8
405,295 + GFF375 0.50 -1.4
405,295 + GFF375 0.50 -2.6
405,295 + GFF375 0.50 +0.4
405,296 - GFF375 0.50 -0.8
405,296 - GFF375 0.50 +0.2
405,296 - GFF375 0.50 -0.6
405,296 - GFF375 0.50 -0.2
405,296 - GFF375 0.50 -1.5
405,296 - GFF375 0.50 -0.2
405,385 + GFF375 0.60 +0.2
405,386 - GFF375 0.61 +0.2
405,418 + GFF375 0.64 +0.0
405,418 + GFF375 0.64 -0.9
405,418 + GFF375 0.64 -0.3
405,418 + GFF375 0.64 -1.0
405,418 + GFF375 0.64 -0.1
405,419 - GFF375 0.64 -0.5
405,419 - GFF375 0.64 -1.1
405,419 - GFF375 0.64 +0.4
405,419 - GFF375 0.64 -0.7
405,419 - GFF375 0.64 -0.8
405,419 - GFF375 0.64 -0.3
405,419 - GFF375 0.64 -0.2
405,419 - GFF375 0.64 +1.6
405,631 + GFF375 0.89 -1.3
405,631 + GFF375 0.89 -0.9
405,631 + GFF375 0.89 +0.2
405,631 + GFF375 0.89 -0.0
405,631 + GFF375 0.89 +0.3
405,631 + GFF375 0.89 -0.4
405,632 - GFF375 0.89 -0.4
405,632 - GFF375 0.89 -1.1
405,632 - GFF375 0.89 +1.2
405,632 - GFF375 0.89 -0.7
405,632 - GFF375 0.89 -1.9
405,632 - GFF375 0.89 -1.3
405,632 - GFF375 0.89 +0.2
405,632 - GFF375 0.89 +1.6
405,632 - GFF375 0.89 -1.3

Or see this region's nucleotide sequence