Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3707 and GFF3708 are separated by 19 nucleotides GFF3708 and GFF3709 are separated by 8 nucleotides
GFF3707 - ABC transporter, permease protein 1 (cluster 11, riboflavin/purine nucleoside/unknown), at 206,686 to 207,807
GFF3707
GFF3708 - ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown) / ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 207,827 to 209,353
GFF3708
GFF3709 - ABC transporter, substrate-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 209,362 to 210,471
GFF3709
Position (kb) 207
208
209
210 Strain fitness (log2 ratio) -1
0
1 at 206.930 kb on + strand, within GFF3707 at 206.930 kb on + strand, within GFF3707 at 207.020 kb on + strand, within GFF3707 at 207.020 kb on + strand, within GFF3707 at 207.089 kb on + strand, within GFF3707 at 207.089 kb on + strand, within GFF3707 at 207.254 kb on + strand, within GFF3707 at 207.255 kb on - strand, within GFF3707 at 207.287 kb on + strand, within GFF3707 at 207.287 kb on + strand, within GFF3707 at 207.287 kb on + strand, within GFF3707 at 207.288 kb on - strand, within GFF3707 at 207.288 kb on - strand, within GFF3707 at 207.727 kb on + strand at 207.728 kb on - strand at 207.728 kb on - strand at 207.728 kb on - strand at 208.203 kb on - strand, within GFF3708 at 208.266 kb on + strand, within GFF3708 at 208.266 kb on + strand, within GFF3708 at 208.709 kb on + strand, within GFF3708 at 208.728 kb on + strand, within GFF3708 at 208.728 kb on + strand, within GFF3708 at 208.995 kb on - strand, within GFF3708 at 209.193 kb on + strand, within GFF3708 at 209.363 kb on + strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.480 kb on + strand, within GFF3709 at 209.741 kb on + strand, within GFF3709 at 209.741 kb on + strand, within GFF3709 at 209.742 kb on - strand, within GFF3709 at 209.873 kb on + strand, within GFF3709 at 209.873 kb on + strand, within GFF3709 at 209.874 kb on - strand, within GFF3709 at 209.874 kb on - strand, within GFF3709 at 210.023 kb on + strand, within GFF3709 at 210.023 kb on + strand, within GFF3709 at 210.024 kb on - strand, within GFF3709 at 210.047 kb on + strand, within GFF3709 at 210.110 kb on + strand, within GFF3709 at 210.332 kb on + strand, within GFF3709
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 206,930 + GFF3707 0.22 -0.6 206,930 + GFF3707 0.22 +0.1 207,020 + GFF3707 0.30 -0.0 207,020 + GFF3707 0.30 -0.9 207,089 + GFF3707 0.36 -0.9 207,089 + GFF3707 0.36 -1.4 207,254 + GFF3707 0.51 -0.1 207,255 - GFF3707 0.51 +1.0 207,287 + GFF3707 0.54 +0.4 207,287 + GFF3707 0.54 -0.4 207,287 + GFF3707 0.54 -0.1 207,288 - GFF3707 0.54 +1.3 207,288 - GFF3707 0.54 -0.4 207,727 + +1.3 207,728 - -1.1 207,728 - -0.7 207,728 - -0.8 208,203 - GFF3708 0.25 -1.6 208,266 + GFF3708 0.29 -0.9 208,266 + GFF3708 0.29 -0.2 208,709 + GFF3708 0.58 -0.4 208,728 + GFF3708 0.59 -0.1 208,728 + GFF3708 0.59 -1.4 208,995 - GFF3708 0.76 -0.4 209,193 + GFF3708 0.89 +1.5 209,363 + -1.1 209,364 - -0.4 209,364 - -0.5 209,364 - -0.6 209,364 - -0.5 209,364 - -1.0 209,364 - -0.5 209,480 + GFF3709 0.11 -0.4 209,741 + GFF3709 0.34 +0.4 209,741 + GFF3709 0.34 +0.4 209,742 - GFF3709 0.34 +0.3 209,873 + GFF3709 0.46 +0.1 209,873 + GFF3709 0.46 +1.6 209,874 - GFF3709 0.46 -1.2 209,874 - GFF3709 0.46 +1.5 210,023 + GFF3709 0.60 -1.0 210,023 + GFF3709 0.60 -0.2 210,024 - GFF3709 0.60 +0.0 210,047 + GFF3709 0.62 +0.2 210,110 + GFF3709 0.67 +0.5 210,332 + GFF3709 0.87 -0.9
Or see this region's nucleotide sequence