Strain Fitness in Variovorax sp. SCN45 around GFF3666

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3664 and GFF3665 are separated by 48 nucleotidesGFF3665 and GFF3666 are separated by 42 nucleotidesGFF3666 and GFF3667 overlap by 4 nucleotides GFF3664 - Transcriptional regulator, AraC family, at 165,588 to 166,295 GFF3664 GFF3665 - no description, at 166,344 to 166,898 GFF3665 GFF3666 - Inner membrane protein YbiR, putative anion permease, at 166,941 to 168,104 GFF3666 GFF3667 - Uncharacterized MFS-type transporter, at 168,101 to 169,369 GFF3667 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.977 kb on - strand, within GFF3664at 165.977 kb on - strand, within GFF3664at 165.977 kb on - strand, within GFF3664at 165.977 kb on - strand, within GFF3664at 166.446 kb on + strand, within GFF3665at 166.446 kb on + strand, within GFF3665at 166.447 kb on - strand, within GFF3665at 166.447 kb on - strand, within GFF3665at 166.447 kb on - strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.645 kb on + strand, within GFF3665at 166.646 kb on - strand, within GFF3665at 166.646 kb on - strand, within GFF3665at 166.646 kb on - strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 167.131 kb on + strand, within GFF3666at 167.132 kb on - strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.198 kb on - strand, within GFF3666at 167.198 kb on - strand, within GFF3666at 167.198 kb on - strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.351 kb on - strand, within GFF3666at 167.351 kb on - strand, within GFF3666at 167.351 kb on - strand, within GFF3666at 167.403 kb on + strand, within GFF3666at 167.404 kb on - strand, within GFF3666at 167.404 kb on - strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.717 kb on + strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.858 kb on + strand, within GFF3667at 169.071 kb on + strand, within GFF3667at 169.071 kb on + strand, within GFF3667at 169.072 kb on - strand, within GFF3667

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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165,976 + GFF3664 0.55 -1.1
165,976 + GFF3664 0.55 +0.8
165,976 + GFF3664 0.55 +0.2
165,976 + GFF3664 0.55 -0.7
165,976 + GFF3664 0.55 +0.4
165,976 + GFF3664 0.55 +1.8
165,976 + GFF3664 0.55 -0.4
165,977 - GFF3664 0.55 -0.9
165,977 - GFF3664 0.55 -0.7
165,977 - GFF3664 0.55 -0.5
165,977 - GFF3664 0.55 -0.5
166,446 + GFF3665 0.18 +0.1
166,446 + GFF3665 0.18 -0.1
166,447 - GFF3665 0.19 -1.1
166,447 - GFF3665 0.19 -0.2
166,447 - GFF3665 0.19 -0.9
166,552 + GFF3665 0.37 -0.3
166,552 + GFF3665 0.37 -3.0
166,552 + GFF3665 0.37 -0.8
166,552 + GFF3665 0.37 -0.4
166,552 + GFF3665 0.37 +1.3
166,552 + GFF3665 0.37 -0.8
166,552 + GFF3665 0.37 -0.4
166,552 + GFF3665 0.37 -0.5
166,552 + GFF3665 0.37 +0.3
166,553 - GFF3665 0.38 +0.3
166,553 - GFF3665 0.38 +0.3
166,553 - GFF3665 0.38 +0.8
166,553 - GFF3665 0.38 -0.4
166,553 - GFF3665 0.38 -0.1
166,553 - GFF3665 0.38 -0.3
166,645 + GFF3665 0.54 +0.2
166,646 - GFF3665 0.54 +1.3
166,646 - GFF3665 0.54 -0.4
166,646 - GFF3665 0.54 -2.2
166,831 + GFF3665 0.88 +1.1
166,831 + GFF3665 0.88 -1.0
166,831 + GFF3665 0.88 -0.4
166,831 + GFF3665 0.88 +1.1
166,831 + GFF3665 0.88 +1.8
166,831 + GFF3665 0.88 +0.3
166,831 + GFF3665 0.88 -1.6
166,832 - GFF3665 0.88 -1.2
166,832 - GFF3665 0.88 +0.6
166,832 - GFF3665 0.88 +0.3
166,832 - GFF3665 0.88 -0.2
166,832 - GFF3665 0.88 -0.5
166,832 - GFF3665 0.88 -0.2
166,832 - GFF3665 0.88 +0.4
166,832 - GFF3665 0.88 -0.7
166,832 - GFF3665 0.88 +0.2
167,131 + GFF3666 0.16 +0.7
167,132 - GFF3666 0.16 -0.9
167,197 + GFF3666 0.22 +0.4
167,197 + GFF3666 0.22 -0.5
167,197 + GFF3666 0.22 -0.4
167,197 + GFF3666 0.22 -0.9
167,198 - GFF3666 0.22 -1.0
167,198 - GFF3666 0.22 +0.3
167,198 - GFF3666 0.22 -1.3
167,350 + GFF3666 0.35 -0.1
167,350 + GFF3666 0.35 +0.1
167,350 + GFF3666 0.35 -0.6
167,350 + GFF3666 0.35 -0.3
167,350 + GFF3666 0.35 -0.5
167,351 - GFF3666 0.35 -0.3
167,351 - GFF3666 0.35 -0.2
167,351 - GFF3666 0.35 -0.2
167,403 + GFF3666 0.40 -0.6
167,404 - GFF3666 0.40 -0.9
167,404 - GFF3666 0.40 -0.2
167,608 + GFF3666 0.57 -0.3
167,608 + GFF3666 0.57 -0.8
167,608 + GFF3666 0.57 -0.3
167,608 + GFF3666 0.57 -0.2
167,608 + GFF3666 0.57 +0.1
167,608 + GFF3666 0.57 -0.7
167,608 + GFF3666 0.57 -1.2
167,609 - GFF3666 0.57 +0.6
167,609 - GFF3666 0.57 -0.6
167,609 - GFF3666 0.57 +1.6
167,609 - GFF3666 0.57 +0.1
167,609 - GFF3666 0.57 -0.8
167,609 - GFF3666 0.57 +0.4
168,459 + GFF3667 0.28 -0.4
168,459 + GFF3667 0.28 -0.9
168,459 + GFF3667 0.28 -0.7
168,459 + GFF3667 0.28 -1.3
168,459 + GFF3667 0.28 +0.3
168,459 + GFF3667 0.28 -0.0
168,460 - GFF3667 0.28 +0.3
168,460 - GFF3667 0.28 -0.7
168,460 - GFF3667 0.28 -2.1
168,460 - GFF3667 0.28 +0.6
168,460 - GFF3667 0.28 -0.9
168,460 - GFF3667 0.28 -0.4
168,717 + GFF3667 0.49 -1.4
168,718 - GFF3667 0.49 +0.2
168,718 - GFF3667 0.49 -2.3
168,718 - GFF3667 0.49 -0.1
168,718 - GFF3667 0.49 +0.3
168,718 - GFF3667 0.49 -0.3
168,858 + GFF3667 0.60 -0.6
169,071 + GFF3667 0.76 -0.2
169,071 + GFF3667 0.76 -0.4
169,072 - GFF3667 0.77 +0.0

Or see this region's nucleotide sequence