Strain Fitness in Variovorax sp. SCN45 around GFF3593

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
104,120	+		GFF3592	0.44	+0.3
104,120	+		GFF3592	0.44	-0.8
104,120	+		GFF3592	0.44	-0.0
104,184	-		GFF3592	0.49	+0.1
104,345	+		GFF3592	0.61	+0.0
104,346	-		GFF3592	0.61	-0.4
104,346	-		GFF3592	0.61	-0.2
104,346	-		GFF3592	0.61	-0.9
104,346	-		GFF3592	0.61	-0.4
104,601	+		GFF3592	0.80	+0.8
104,601	+		GFF3592	0.80	-0.4
104,602	-		GFF3592	0.81	+0.6
104,602	-		GFF3592	0.81	-1.0
104,602	-		GFF3592	0.81	-0.7
104,603	+		GFF3592	0.81	-0.6
104,603	+		GFF3592	0.81	-0.9
104,603	+		GFF3592	0.81	-0.6
104,603	+		GFF3592	0.81	-0.5
104,603	+		GFF3592	0.81	+0.2
104,603	+		GFF3592	0.81	-0.6
104,603	+		GFF3592	0.81	+0.3
104,603	+		GFF3592	0.81	+0.7
104,604	-		GFF3592	0.81	+0.2
104,604	-		GFF3592	0.81	+0.1
104,604	-		GFF3592	0.81	-0.2
104,604	-		GFF3592	0.81	+0.4
104,604	-		GFF3592	0.81	-0.1
104,604	-		GFF3592	0.81	-0.3
104,604	-		GFF3592	0.81	-0.5
104,604	-		GFF3592	0.81	-0.8
104,880	+				+1.1
104,880	+				-0.1
104,880	+				-0.2
104,880	+				-0.2
104,880	+				-0.5
104,880	+				-0.1
104,880	+				+1.1
104,880	+				-0.0
104,880	+				+1.4
104,880	+				-0.5
104,880	+				-0.6
104,880	+				+1.4
104,880	+				+0.9
104,881	-				-0.0
104,881	-				-0.0
104,881	-				-1.3
104,881	-				-0.7
104,881	-				+0.1
104,881	-				+0.1
104,881	-				+0.8
104,881	-				-0.9
104,881	-				-0.7
104,881	-				-0.8
104,881	-				-0.4
104,881	-				-0.3
104,881	-				-1.3
104,881	-				-0.3
104,881	-				-1.6
104,881	-				-0.6
104,881	-				+0.3
104,881	-				-2.1
104,881	-				-0.3
104,915	+				+0.9
104,916	-				+0.1
104,916	-				-1.0
104,993	+				+2.1
104,994	-				+0.6
104,994	-				+0.0
104,994	-				-0.1
104,994	-				-0.9
104,994	-				-0.4
104,994	-				+2.1
105,141	+				+0.8
105,141	+				+0.0
105,141	+				-0.4
105,141	+				-0.1
105,141	+				-0.6
105,141	+				-0.5
105,141	+				+3.9
105,141	+				-1.2
105,141	+				+0.1
105,142	-				+1.7
105,142	-				-1.7
105,142	-				+1.4
105,142	-				-0.1
105,142	-				+1.4
105,142	-				+0.7
105,142	-				+1.0
105,142	-				+0.8
105,144	+				-0.2
105,144	+				-1.0
105,144	+				-0.7
105,144	+				-0.1
105,144	+				-0.7
105,145	-				-1.2
105,145	-				+1.5
105,145	-				-0.2
105,145	-				+0.4
105,255	+		GFF3593	0.12	-0.6
105,255	+		GFF3593	0.12	-1.6
105,256	-		GFF3593	0.12	-1.1
105,256	-		GFF3593	0.12	+0.7
105,256	-		GFF3593	0.12	-0.9
105,333	+		GFF3593	0.16	+0.3
105,333	+		GFF3593	0.16	+0.8
105,333	+		GFF3593	0.16	+0.9
105,333	+		GFF3593	0.16	-0.4
105,333	+		GFF3593	0.16	-0.1
105,333	+		GFF3593	0.16	+1.3
105,333	+		GFF3593	0.16	-0.3
105,333	+		GFF3593	0.16	+0.3
105,333	+		GFF3593	0.16	-0.7
105,333	+		GFF3593	0.16	+0.0
105,334	-		GFF3593	0.16	-0.7
105,334	-		GFF3593	0.16	+2.5
105,334	-		GFF3593	0.16	+0.1
105,334	-		GFF3593	0.16	-0.9
105,334	-		GFF3593	0.16	+0.0
105,334	-		GFF3593	0.16	-1.1
105,334	-		GFF3593	0.16	-0.2
105,334	-		GFF3593	0.16	-0.1
105,334	-		GFF3593	0.16	-0.3
105,334	-		GFF3593	0.16	-0.4
105,334	-		GFF3593	0.16	-0.2
105,336	+		GFF3593	0.16	-0.9
105,336	+		GFF3593	0.16	-0.4
105,336	+		GFF3593	0.16	-0.4
105,337	-		GFF3593	0.16	+0.0
105,337	-		GFF3593	0.16	+0.4
105,337	-		GFF3593	0.16	-0.6
105,429	+		GFF3593	0.21	-0.3
105,429	+		GFF3593	0.21	-1.9
105,429	+		GFF3593	0.21	+0.3
105,429	+		GFF3593	0.21	+0.4
105,429	+		GFF3593	0.21	+0.0
105,429	+		GFF3593	0.21	+0.1
105,430	-		GFF3593	0.21	-0.4
105,498	+		GFF3593	0.24	+0.6
105,498	+		GFF3593	0.24	-1.1
105,498	+		GFF3593	0.24	+0.1
105,499	-		GFF3593	0.24	-0.2
105,499	-		GFF3593	0.24	-1.3
105,499	-		GFF3593	0.24	+0.2
105,559	+		GFF3593	0.27	+0.7
105,642	+		GFF3593	0.31	-0.4
105,642	+		GFF3593	0.31	-0.9
105,642	+		GFF3593	0.31	+1.1
105,642	+		GFF3593	0.31	-1.6
105,643	-		GFF3593	0.31	-0.7
105,643	-		GFF3593	0.31	+0.1
105,643	-		GFF3593	0.31	-0.3
105,643	-		GFF3593	0.31	+0.7
105,643	-		GFF3593	0.31	+0.6
105,646	+		GFF3593	0.31	-0.2
105,646	+		GFF3593	0.31	+0.2
105,646	+		GFF3593	0.31	-0.0
105,646	+		GFF3593	0.31	-1.2
105,646	+		GFF3593	0.31	+0.0
105,646	+		GFF3593	0.31	+0.8
105,646	+		GFF3593	0.31	-0.9
105,646	+		GFF3593	0.31	+0.1
105,647	-		GFF3593	0.31	-0.4
105,647	-		GFF3593	0.31	+0.1
105,647	-		GFF3593	0.31	-0.6
105,647	-		GFF3593	0.31	-1.6
105,647	-		GFF3593	0.31	+1.0
105,647	-		GFF3593	0.31	-0.6
105,647	-		GFF3593	0.31	+0.9
105,647	-		GFF3593	0.31	-0.5
105,647	-		GFF3593	0.31	-0.2
105,678	+		GFF3593	0.33	+0.5
105,678	+		GFF3593	0.33	-0.0
105,678	+		GFF3593	0.33	+0.4
105,678	+		GFF3593	0.33	-0.5
105,678	+		GFF3593	0.33	+0.2
105,678	+		GFF3593	0.33	+0.1
105,678	+		GFF3593	0.33	-0.6
105,678	+		GFF3593	0.33	-0.3
105,678	+		GFF3593	0.33	+0.4
105,678	+		GFF3593	0.33	+0.9
105,679	-		GFF3593	0.33	+0.2
105,679	-		GFF3593	0.33	-0.9
105,679	-		GFF3593	0.33	-0.7
105,679	-		GFF3593	0.33	+0.3
105,679	-		GFF3593	0.33	-0.4
105,679	-		GFF3593	0.33	-0.1
105,679	-		GFF3593	0.33	-1.1
105,679	-		GFF3593	0.33	+0.7
105,679	-		GFF3593	0.33	-0.5
105,679	-		GFF3593	0.33	+0.6
105,680	+		GFF3593	0.33	+0.2
105,680	+		GFF3593	0.33	-1.5
105,680	+		GFF3593	0.33	-0.4
105,680	+		GFF3593	0.33	-2.0
105,680	+		GFF3593	0.33	-0.1
105,680	+		GFF3593	0.33	+0.4
105,680	+		GFF3593	0.33	+0.6
105,680	+		GFF3593	0.33	-0.2
105,681	-		GFF3593	0.33	+0.0
105,681	-		GFF3593	0.33	+0.1
105,681	-		GFF3593	0.33	+0.4
105,681	-		GFF3593	0.33	-0.9
105,681	-		GFF3593	0.33	+0.9
105,888	+		GFF3593	0.43	+0.3
105,888	+		GFF3593	0.43	+0.0
105,888	+		GFF3593	0.43	-0.7
105,888	+		GFF3593	0.43	+0.2
105,888	+		GFF3593	0.43	+0.7
105,888	+		GFF3593	0.43	+1.1
105,888	+		GFF3593	0.43	-0.4
105,888	+		GFF3593	0.43	+0.1
105,888	+		GFF3593	0.43	+1.6
105,889	-		GFF3593	0.43	-0.2
105,889	-		GFF3593	0.43	-0.5
105,889	-		GFF3593	0.43	-0.0
105,889	-		GFF3593	0.43	-0.0
105,889	-		GFF3593	0.43	-0.3
105,889	-		GFF3593	0.43	+0.4
105,889	-		GFF3593	0.43	-0.7
106,224	+		GFF3593	0.60	+0.3
106,224	+		GFF3593	0.60	+0.3
106,224	+		GFF3593	0.60	+0.9
106,224	+		GFF3593	0.60	+0.4
106,225	-		GFF3593	0.60	-0.0
106,225	-		GFF3593	0.60	-0.1
106,225	-		GFF3593	0.60	-0.0
106,225	-		GFF3593	0.60	+0.6
106,482	+		GFF3593	0.72	+0.3
106,482	+		GFF3593	0.72	-0.7
106,482	+		GFF3593	0.72	-0.2
106,482	+		GFF3593	0.72	-0.2
106,482	+		GFF3593	0.72	+0.1
106,483	-		GFF3593	0.72	+0.9
106,483	-		GFF3593	0.72	+0.2
106,483	-		GFF3593	0.72	+0.7
106,483	-		GFF3593	0.72	+0.3
106,707	+		GFF3593	0.83	+0.6
106,707	+		GFF3593	0.83	-0.0
106,707	+		GFF3593	0.83	-0.3
106,707	+		GFF3593	0.83	+0.8
106,707	+		GFF3593	0.83	+0.2
106,707	+		GFF3593	0.83	+0.6
106,707	+		GFF3593	0.83	-0.2
106,707	+		GFF3593	0.83	-0.1
106,707	+		GFF3593	0.83	+0.6
106,707	+		GFF3593	0.83	-1.0
106,707	+		GFF3593	0.83	+0.0
106,708	-		GFF3593	0.84	-1.9
106,708	-		GFF3593	0.84	-0.2
106,708	-		GFF3593	0.84	+0.0
106,708	-		GFF3593	0.84	-0.3
106,708	-		GFF3593	0.84	+0.2
106,708	-		GFF3593	0.84	-0.4
106,708	-		GFF3593	0.84	-1.4
106,708	-		GFF3593	0.84	-0.1
106,708	-		GFF3593	0.84	-0.8
106,708	-		GFF3593	0.84	-0.4
106,708	-		GFF3593	0.84	-1.0
106,708	-		GFF3593	0.84	+0.7
106,708	-		GFF3593	0.84	-0.9
106,708	-		GFF3593	0.84	-0.6
106,708	-		GFF3593	0.84	-0.4
106,708	-		GFF3593	0.84	-0.0
106,776	+		GFF3593	0.87	+1.2
106,776	+		GFF3593	0.87	+0.6
106,776	+		GFF3593	0.87	+0.1
106,776	+		GFF3593	0.87	+0.2
106,776	+		GFF3593	0.87	+0.6
106,776	+		GFF3593	0.87	-0.3
106,776	+		GFF3593	0.87	+2.1
106,776	+		GFF3593	0.87	-0.8
106,776	+		GFF3593	0.87	-0.2
106,776	+		GFF3593	0.87	-0.6
106,777	-		GFF3593	0.87	-0.7
106,777	-		GFF3593	0.87	+0.9
106,777	-		GFF3593	0.87	-0.4
106,777	-		GFF3593	0.87	+0.1
106,777	-		GFF3593	0.87	-0.4
106,777	-		GFF3593	0.87	+0.1
106,777	-		GFF3593	0.87	-1.3
106,777	-		GFF3593	0.87	-0.9
106,777	-		GFF3593	0.87	-0.1
106,777	-		GFF3593	0.87	-0.3
106,777	-		GFF3593	0.87	-1.2
106,777	-		GFF3593	0.87	-1.1
106,777	-		GFF3593	0.87	-0.2
106,777	-		GFF3593	0.87	-0.4
106,777	-		GFF3593	0.87	-0.0
107,022	+				-0.4
107,022	+				+0.5
107,022	+				+0.0
107,022	+				-0.4
107,023	-				-0.6
107,023	-				+1.7
107,023	-				-0.1
107,023	-				+0.5
107,023	-				+0.2
107,040	+				+1.6
107,041	-				+1.6
107,041	-				-0.3
107,041	-				-0.3
107,041	-				+2.7
107,041	-				-0.2
107,071	+				-0.4
107,071	+				+0.3
107,071	+				-0.2
107,072	-				-0.1
107,072	-				-0.2
107,072	-				+0.9
107,072	-				+0.4
107,092	+				-0.9
107,093	-				+0.6
107,110	+				-0.7
107,110	+				-0.2
107,244	+		GFF3594	0.23	-0.4
107,244	+		GFF3594	0.23	+2.1
107,244	+		GFF3594	0.23	+0.3
107,244	+		GFF3594	0.23	+0.0
107,244	+		GFF3594	0.23	+0.3
107,245	-		GFF3594	0.23	-1.2
107,245	-		GFF3594	0.23	+0.3
107,245	-		GFF3594	0.23	-0.8
107,245	-		GFF3594	0.23	+0.9
107,245	-		GFF3594	0.23	+1.5
107,309	+		GFF3594	0.39	-0.4
107,309	+		GFF3594	0.39	-0.4
107,309	+		GFF3594	0.39	-0.5
107,309	+		GFF3594	0.39	+0.7
107,309	+		GFF3594	0.39	-0.0
107,309	+		GFF3594	0.39	-1.4
107,309	+		GFF3594	0.39	+0.9
107,309	+		GFF3594	0.39	-0.8
107,309	+		GFF3594	0.39	+1.3
107,309	+		GFF3594	0.39	+0.3
107,309	+		GFF3594	0.39	-0.1
107,309	+		GFF3594	0.39	+2.1
107,309	+		GFF3594	0.39	+0.7
107,309	+		GFF3594	0.39	+0.6
107,309	+		GFF3594	0.39	+1.8
107,309	+		GFF3594	0.39	-0.9
107,309	+		GFF3594	0.39	+1.3
107,309	+		GFF3594	0.39	-0.3
107,309	+		GFF3594	0.39	-0.5
107,310	-		GFF3594	0.39	-0.7
107,310	-		GFF3594	0.39	-0.2
107,310	-		GFF3594	0.39	-0.0
107,310	-		GFF3594	0.39	+1.0
107,310	-		GFF3594	0.39	-0.7
107,310	-		GFF3594	0.39	-0.9
107,310	-		GFF3594	0.39	+1.1
107,310	-		GFF3594	0.39	+0.3
107,310	-		GFF3594	0.39	-0.2
107,310	-		GFF3594	0.39	-1.0
107,310	-		GFF3594	0.39	+0.3
107,310	-		GFF3594	0.39	+1.6
107,310	-		GFF3594	0.39	-0.6
107,310	-		GFF3594	0.39	+0.1
107,340	+		GFF3594	0.46	+2.4
107,341	-		GFF3594	0.47	-0.8
107,457	+		GFF3594	0.75	+0.1
107,458	-		GFF3594	0.75	-0.1
107,458	-		GFF3594	0.75	-0.5
107,458	-		GFF3594	0.75	-0.4
107,493	+		GFF3594	0.83	+1.1
107,493	+		GFF3594	0.83	-1.0
107,493	+		GFF3594	0.83	-0.2
107,493	+		GFF3594	0.83	+0.7
107,494	-		GFF3594	0.84	-0.9
107,494	-		GFF3594	0.84	+0.6
107,539	+				-1.6
107,539	+				+0.8
107,539	+				+0.9
107,539	+				+0.8
107,539	+				-0.3
107,539	+				+0.0
107,539	+				-0.2
107,540	-				+0.6
107,540	-				-0.5
107,540	-				+0.7
107,581	+				-0.4
107,581	+				-0.4
107,581	+				+1.1
107,581	+				-0.2
107,582	-				-0.7
107,610	+				-0.6
107,610	+				-0.7
107,610	+				+0.6
107,610	+				+0.2
107,610	+				-0.2
107,611	-				-0.1
107,611	-				-0.2
107,611	-				-0.9
107,611	-				-0.3
107,611	-				-1.1
107,611	-				-0.8
107,611	-				+0.3
107,611	-				+0.4
107,611	-				+0.6
107,611	-				+1.1
107,707	-				+0.6
107,707	-				-1.1
107,707	-				+0.9
107,709	+				+0.2
107,709	+				-1.3
107,709	+				-0.5
107,709	+				-1.2
107,709	+				-0.4
107,709	+				+0.6
107,709	+				-0.4
107,710	-				-0.9
107,710	-				+0.2
107,710	-				+0.1
107,710	-				-0.2
107,710	-				-0.9
107,710	-				-0.3
107,710	-				-0.6
107,710	-				-0.3
107,710	-				-0.8
107,710	-				-0.9
107,710	-				+0.1
107,710	-				+0.5
107,710	-				+1.4
107,751	+				-0.4
107,766	+				-0.3
107,766	+				+0.1
107,766	+				-1.0
107,766	+				-0.2
107,767	-				+1.0
107,771	+				-0.6
107,771	+				+1.1
107,771	+				-0.7
107,771	+				+0.1
107,771	+				+1.6
107,771	+				-0.7
107,772	-				-0.2
107,772	-				+0.1
107,772	-				-0.5
107,823	-				+0.2
107,928	+				-0.2
107,928	+				+0.1
107,928	+				+0.7
107,928	+				+0.3
107,929	-				-1.0
107,976	+				+0.1