Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3573 and GFF3574 are separated by 96 nucleotides GFF3574 and GFF3575 overlap by 4 nucleotides GFF3575 and GFF3576 overlap by 4 nucleotides
GFF3573 - Efflux ABC transporter, ATP-binding protein, at 85,350 to 86,294
GFF3573
GFF3574 - hypothetical protein, at 86,391 to 87,233
GFF3574
GFF3575 - no description, at 87,230 to 87,916
GFF3575
GFF3576 - no description, at 87,913 to 88,554
GFF3576
Position (kb) 86
87
88 Strain fitness (log2 ratio) -2
-1
0
1
2 at 85.480 kb on + strand, within GFF3573 at 85.481 kb on - strand, within GFF3573 at 85.570 kb on + strand, within GFF3573 at 85.570 kb on + strand, within GFF3573 at 85.570 kb on + strand, within GFF3573 at 85.571 kb on - strand, within GFF3573 at 85.963 kb on + strand, within GFF3573 at 85.972 kb on + strand, within GFF3573 at 85.972 kb on + strand, within GFF3573 at 86.234 kb on - strand at 86.670 kb on + strand, within GFF3574 at 86.670 kb on + strand, within GFF3574 at 86.670 kb on + strand, within GFF3574 at 86.677 kb on - strand, within GFF3574 at 86.826 kb on + strand, within GFF3574 at 86.826 kb on + strand, within GFF3574 at 86.827 kb on - strand, within GFF3574 at 86.827 kb on - strand, within GFF3574 at 86.827 kb on - strand, within GFF3574 at 86.827 kb on - strand, within GFF3574 at 86.827 kb on - strand, within GFF3574 at 86.847 kb on + strand, within GFF3574 at 86.848 kb on - strand, within GFF3574 at 86.848 kb on - strand, within GFF3574 at 86.848 kb on - strand, within GFF3574 at 86.848 kb on - strand, within GFF3574 at 86.928 kb on + strand, within GFF3574 at 86.928 kb on + strand, within GFF3574 at 86.929 kb on - strand, within GFF3574 at 87.422 kb on + strand, within GFF3575 at 87.422 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.722 kb on + strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 87.723 kb on - strand, within GFF3575 at 88.074 kb on + strand, within GFF3576 at 88.074 kb on + strand, within GFF3576 at 88.075 kb on - strand, within GFF3576
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 85,480 + GFF3573 0.14 +0.3 85,481 - GFF3573 0.14 -1.9 85,570 + GFF3573 0.23 -0.5 85,570 + GFF3573 0.23 -1.6 85,570 + GFF3573 0.23 +0.6 85,571 - GFF3573 0.23 +0.2 85,963 + GFF3573 0.65 +0.1 85,972 + GFF3573 0.66 +2.0 85,972 + GFF3573 0.66 -0.4 86,234 - -0.4 86,670 + GFF3574 0.33 +0.4 86,670 + GFF3574 0.33 -0.1 86,670 + GFF3574 0.33 +0.8 86,677 - GFF3574 0.34 -0.2 86,826 + GFF3574 0.52 +0.1 86,826 + GFF3574 0.52 +0.8 86,827 - GFF3574 0.52 +2.7 86,827 - GFF3574 0.52 +0.7 86,827 - GFF3574 0.52 +0.1 86,827 - GFF3574 0.52 +0.4 86,827 - GFF3574 0.52 +0.1 86,847 + GFF3574 0.54 -0.6 86,848 - GFF3574 0.54 -0.3 86,848 - GFF3574 0.54 +1.4 86,848 - GFF3574 0.54 +2.1 86,848 - GFF3574 0.54 -1.0 86,928 + GFF3574 0.64 -0.3 86,928 + GFF3574 0.64 -1.5 86,929 - GFF3574 0.64 -0.4 87,422 + GFF3575 0.28 +0.1 87,422 + GFF3575 0.28 -0.3 87,722 + GFF3575 0.72 -0.8 87,722 + GFF3575 0.72 -0.7 87,722 + GFF3575 0.72 -0.6 87,723 - GFF3575 0.72 +0.0 87,723 - GFF3575 0.72 -1.4 87,723 - GFF3575 0.72 +1.7 88,074 + GFF3576 0.25 +0.7 88,074 + GFF3576 0.25 -1.4 88,075 - GFF3576 0.25 -0.0
Or see this region's nucleotide sequence