Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3495 and GFF3496 overlap by 4 nucleotides
GFF3495 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 222 to 1,055
GFF3495
GFF3496 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,052 to 2,974
GFF3496
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.241 kb on + strand at 0.242 kb on - strand at 0.308 kb on - strand, within GFF3495 at 0.830 kb on - strand, within GFF3495 at 0.830 kb on - strand, within GFF3495 at 1.179 kb on + strand at 1.204 kb on - strand at 1.405 kb on - strand, within GFF3496 at 1.460 kb on + strand, within GFF3496 at 1.551 kb on + strand, within GFF3496 at 1.551 kb on + strand, within GFF3496 at 1.551 kb on + strand, within GFF3496 at 1.551 kb on + strand, within GFF3496 at 1.552 kb on - strand, within GFF3496 at 1.552 kb on - strand, within GFF3496 at 1.552 kb on - strand, within GFF3496 at 1.662 kb on + strand, within GFF3496 at 1.707 kb on + strand, within GFF3496 at 1.707 kb on + strand, within GFF3496 at 1.708 kb on - strand, within GFF3496 at 1.708 kb on - strand, within GFF3496 at 1.708 kb on - strand, within GFF3496 at 1.836 kb on + strand, within GFF3496 at 1.837 kb on - strand, within GFF3496 at 1.837 kb on - strand, within GFF3496 at 1.861 kb on - strand, within GFF3496 at 1.861 kb on - strand, within GFF3496 at 1.893 kb on + strand, within GFF3496 at 1.935 kb on + strand, within GFF3496 at 1.936 kb on - strand, within GFF3496 at 1.984 kb on - strand, within GFF3496 at 2.007 kb on + strand, within GFF3496
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 241 + -0.1 242 - +0.4 308 - GFF3495 0.10 -2.0 830 - GFF3495 0.73 -0.2 830 - GFF3495 0.73 -0.4 1,179 + -1.0 1,204 - +0.5 1,405 - GFF3496 0.18 +1.0 1,460 + GFF3496 0.21 -0.0 1,551 + GFF3496 0.26 +0.2 1,551 + GFF3496 0.26 -0.6 1,551 + GFF3496 0.26 +0.1 1,551 + GFF3496 0.26 -0.0 1,552 - GFF3496 0.26 +0.1 1,552 - GFF3496 0.26 +2.7 1,552 - GFF3496 0.26 +0.2 1,662 + GFF3496 0.32 -0.7 1,707 + GFF3496 0.34 -0.4 1,707 + GFF3496 0.34 -0.4 1,708 - GFF3496 0.34 +1.0 1,708 - GFF3496 0.34 +0.6 1,708 - GFF3496 0.34 -2.2 1,836 + GFF3496 0.41 +1.1 1,837 - GFF3496 0.41 +0.1 1,837 - GFF3496 0.41 -0.3 1,861 - GFF3496 0.42 +0.4 1,861 - GFF3496 0.42 -0.9 1,893 + GFF3496 0.44 -0.8 1,935 + GFF3496 0.46 -0.3 1,936 - GFF3496 0.46 -0.2 1,984 - GFF3496 0.48 +0.6 2,007 + GFF3496 0.50 +0.2
Or see this region's nucleotide sequence