Strain Fitness in Variovorax sp. SCN45 around GFF3482

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3480 and GFF3481 overlap by 8 nucleotidesGFF3481 and GFF3482 overlap by 4 nucleotidesGFF3482 and GFF3483 overlap by 4 nucleotidesGFF3483 and GFF3484 are separated by 67 nucleotides GFF3480 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 303,126 to 303,830 GFF3480 GFF3481 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 303,823 to 304,593 GFF3481 GFF3482 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 304,590 to 305,552 GFF3482 GFF3483 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 305,549 to 306,409 GFF3483 GFF3484 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 306,477 to 307,670 GFF3484 Position (kb) 304 305 306Strain fitness (log2 ratio) -2 -1 0 1at 303.851 kb on + strandat 303.851 kb on + strandat 303.851 kb on + strandat 303.852 kb on - strandat 303.852 kb on - strandat 303.852 kb on - strandat 303.852 kb on - strandat 303.852 kb on - strandat 303.852 kb on - strandat 304.177 kb on + strand, within GFF3481at 304.177 kb on + strand, within GFF3481at 304.177 kb on + strand, within GFF3481at 304.178 kb on - strand, within GFF3481at 304.178 kb on - strand, within GFF3481at 304.692 kb on - strand, within GFF3482at 304.697 kb on - strand, within GFF3482at 304.697 kb on - strand, within GFF3482at 304.738 kb on + strand, within GFF3482at 304.738 kb on + strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.906 kb on + strand, within GFF3482at 304.907 kb on - strand, within GFF3482at 304.907 kb on - strand, within GFF3482at 304.907 kb on - strand, within GFF3482at 304.907 kb on - strand, within GFF3482at 305.053 kb on + strand, within GFF3482at 305.240 kb on - strand, within GFF3482at 305.240 kb on - strand, within GFF3482at 305.240 kb on - strand, within GFF3482at 305.251 kb on + strand, within GFF3482at 305.252 kb on - strand, within GFF3482at 305.314 kb on + strand, within GFF3482at 305.314 kb on + strand, within GFF3482at 305.314 kb on + strand, within GFF3482at 305.315 kb on - strand, within GFF3482at 305.315 kb on - strand, within GFF3482at 305.339 kb on - strand, within GFF3482at 305.389 kb on + strand, within GFF3482at 305.616 kb on + strandat 305.616 kb on + strandat 305.616 kb on + strandat 305.616 kb on + strandat 305.616 kb on + strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.646 kb on + strand, within GFF3483at 305.646 kb on + strand, within GFF3483at 305.646 kb on + strand, within GFF3483at 305.646 kb on + strand, within GFF3483at 305.646 kb on + strand, within GFF3483at 305.647 kb on - strand, within GFF3483at 305.649 kb on + strand, within GFF3483at 305.649 kb on + strand, within GFF3483at 305.649 kb on + strand, within GFF3483at 305.649 kb on + strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.745 kb on + strand, within GFF3483at 305.754 kb on + strand, within GFF3483at 305.754 kb on + strand, within GFF3483at 305.754 kb on + strand, within GFF3483at 305.755 kb on - strand, within GFF3483at 305.755 kb on - strand, within GFF3483at 305.755 kb on - strand, within GFF3483at 306.020 kb on + strand, within GFF3483at 306.084 kb on + strand, within GFF3483at 306.084 kb on + strand, within GFF3483at 306.085 kb on - strand, within GFF3483at 306.156 kb on + strand, within GFF3483at 306.157 kb on - strand, within GFF3483at 306.169 kb on - strand, within GFF3483at 306.277 kb on - strand, within GFF3483at 306.277 kb on - strand, within GFF3483at 306.378 kb on + strandat 306.379 kb on - strandat 306.379 kb on - strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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303,851 + -0.1
303,851 + -0.4
303,851 + -0.2
303,852 - -0.9
303,852 - -1.5
303,852 - -0.1
303,852 - -0.4
303,852 - -0.5
303,852 - -0.3
304,177 + GFF3481 0.46 +0.6
304,177 + GFF3481 0.46 +0.5
304,177 + GFF3481 0.46 -0.1
304,178 - GFF3481 0.46 -0.5
304,178 - GFF3481 0.46 +0.8
304,692 - GFF3482 0.11 +0.4
304,697 - GFF3482 0.11 -0.8
304,697 - GFF3482 0.11 -1.2
304,738 + GFF3482 0.15 -1.0
304,738 + GFF3482 0.15 -0.0
304,739 - GFF3482 0.15 -0.7
304,739 - GFF3482 0.15 -0.2
304,739 - GFF3482 0.15 +1.5
304,739 - GFF3482 0.15 +0.4
304,739 - GFF3482 0.15 +0.9
304,739 - GFF3482 0.15 -2.0
304,906 + GFF3482 0.33 -0.9
304,907 - GFF3482 0.33 +0.3
304,907 - GFF3482 0.33 +1.1
304,907 - GFF3482 0.33 -2.0
304,907 - GFF3482 0.33 -0.2
305,053 + GFF3482 0.48 -1.4
305,240 - GFF3482 0.67 +0.3
305,240 - GFF3482 0.67 -0.4
305,240 - GFF3482 0.67 +0.3
305,251 + GFF3482 0.69 -1.0
305,252 - GFF3482 0.69 -0.0
305,314 + GFF3482 0.75 -0.1
305,314 + GFF3482 0.75 +0.7
305,314 + GFF3482 0.75 +1.7
305,315 - GFF3482 0.75 -1.3
305,315 - GFF3482 0.75 +0.5
305,339 - GFF3482 0.78 +0.3
305,389 + GFF3482 0.83 -0.6
305,616 + -1.5
305,616 + -0.4
305,616 + -0.3
305,616 + +0.7
305,616 + -1.2
305,617 - +1.5
305,617 - +0.1
305,617 - +0.1
305,617 - -1.0
305,617 - -0.9
305,617 - +0.7
305,617 - -0.3
305,617 - -1.6
305,617 - -0.4
305,646 + GFF3483 0.11 +1.4
305,646 + GFF3483 0.11 +0.2
305,646 + GFF3483 0.11 +0.7
305,646 + GFF3483 0.11 +0.2
305,646 + GFF3483 0.11 +0.8
305,647 - GFF3483 0.11 -0.5
305,649 + GFF3483 0.12 +1.1
305,649 + GFF3483 0.12 +0.2
305,649 + GFF3483 0.12 -0.5
305,649 + GFF3483 0.12 -0.1
305,650 - GFF3483 0.12 +0.0
305,650 - GFF3483 0.12 -0.6
305,650 - GFF3483 0.12 +0.1
305,650 - GFF3483 0.12 -0.5
305,650 - GFF3483 0.12 -1.9
305,650 - GFF3483 0.12 -0.3
305,650 - GFF3483 0.12 +0.1
305,745 + GFF3483 0.23 -0.5
305,754 + GFF3483 0.24 +1.1
305,754 + GFF3483 0.24 -0.1
305,754 + GFF3483 0.24 -0.3
305,755 - GFF3483 0.24 +0.8
305,755 - GFF3483 0.24 -0.6
305,755 - GFF3483 0.24 -0.4
306,020 + GFF3483 0.55 -0.0
306,084 + GFF3483 0.62 +0.7
306,084 + GFF3483 0.62 +1.0
306,085 - GFF3483 0.62 -0.5
306,156 + GFF3483 0.70 +0.4
306,157 - GFF3483 0.71 -0.7
306,169 - GFF3483 0.72 +0.1
306,277 - GFF3483 0.85 -0.4
306,277 - GFF3483 0.85 +0.9
306,378 + -1.0
306,379 - -0.5
306,379 - -0.5
306,478 + +0.0
306,478 + +0.5
306,478 + +0.5
306,478 + +0.5
306,478 + -0.4
306,478 + +0.2
306,478 + -0.5
306,478 + -0.1
306,478 + +0.2
306,479 - -0.0
306,479 - -0.5
306,479 - +0.7
306,479 - +0.2
306,479 - +0.1
306,479 - +1.1
306,479 - -0.7
306,479 - -0.7

Or see this region's nucleotide sequence