Strain Fitness in Variovorax sp. SCN45 around GFF3368

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3366 and GFF3367 are separated by 70 nucleotidesGFF3367 and GFF3368 are separated by 139 nucleotidesGFF3368 and GFF3369 are separated by 139 nucleotidesGFF3369 and GFF3370 are separated by 87 nucleotides GFF3366 - Septum site-determining protein MinD, at 185,984 to 186,799 GFF3366 GFF3367 - Septum site-determining protein MinC, at 186,870 to 187,643 GFF3367 GFF3368 - Pyrimidine permease, at 187,783 to 189,066 GFF3368 GFF3369 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis, at 189,206 to 189,628 GFF3369 GFF3370 - hypothetical protein, at 189,716 to 191,053 GFF3370 Position (kb) 187 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 187.072 kb on + strand, within GFF3367at 187.072 kb on + strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.637 kb on - strandat 187.811 kb on + strandat 187.811 kb on + strandat 187.811 kb on + strandat 187.812 kb on - strandat 187.812 kb on - strandat 187.812 kb on - strandat 188.117 kb on + strand, within GFF3368at 188.117 kb on + strand, within GFF3368at 188.117 kb on + strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.234 kb on + strand, within GFF3368at 188.234 kb on + strand, within GFF3368at 188.234 kb on + strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.447 kb on + strand, within GFF3368at 188.448 kb on - strand, within GFF3368at 188.448 kb on - strand, within GFF3368at 188.448 kb on - strand, within GFF3368at 188.448 kb on - strand, within GFF3368at 188.585 kb on + strand, within GFF3368at 188.707 kb on - strand, within GFF3368at 188.707 kb on - strand, within GFF3368at 188.707 kb on - strand, within GFF3368at 188.707 kb on - strand, within GFF3368at 188.707 kb on - strand, within GFF3368at 188.707 kb on - strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.708 kb on + strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.709 kb on - strand, within GFF3368at 188.828 kb on + strand, within GFF3368at 188.828 kb on + strand, within GFF3368at 188.829 kb on - strand, within GFF3368at 188.829 kb on - strand, within GFF3368at 188.858 kb on + strand, within GFF3368at 188.858 kb on + strand, within GFF3368at 188.859 kb on - strand, within GFF3368at 189.411 kb on + strand, within GFF3369at 189.477 kb on + strand, within GFF3369at 189.622 kb on + strandat 189.623 kb on - strandat 189.623 kb on - strandat 189.623 kb on - strandat 189.623 kb on - strandat 189.646 kb on + strandat 189.647 kb on - strandat 189.653 kb on + strandat 189.654 kb on - strandat 189.654 kb on - strandat 189.654 kb on - strandat 189.654 kb on - strandat 189.654 kb on - strandat 189.654 kb on - strandat 189.657 kb on + strandat 189.657 kb on + strandat 189.658 kb on - strandat 189.658 kb on - strandat 189.658 kb on - strandat 189.658 kb on - strandat 189.658 kb on - strandat 189.664 kb on - strandat 189.664 kb on - strandat 189.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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186,967 + GFF3367 0.13 -0.7
186,967 + GFF3367 0.13 +0.3
186,967 + GFF3367 0.13 +1.5
186,967 + GFF3367 0.13 +0.4
186,967 + GFF3367 0.13 +0.9
186,968 - GFF3367 0.13 +0.3
186,968 - GFF3367 0.13 -0.2
186,968 - GFF3367 0.13 +0.5
186,968 - GFF3367 0.13 +1.4
186,968 - GFF3367 0.13 -1.0
187,072 + GFF3367 0.26 -1.2
187,072 + GFF3367 0.26 -1.2
187,073 - GFF3367 0.26 -1.2
187,073 - GFF3367 0.26 -0.7
187,073 - GFF3367 0.26 +0.2
187,073 - GFF3367 0.26 -1.3
187,073 - GFF3367 0.26 -0.1
187,154 - GFF3367 0.37 +2.1
187,154 - GFF3367 0.37 +0.6
187,154 - GFF3367 0.37 -1.1
187,154 - GFF3367 0.37 +0.2
187,154 - GFF3367 0.37 +1.4
187,637 - -1.8
187,811 + -0.2
187,811 + -0.5
187,811 + -0.3
187,812 - -0.2
187,812 - -0.8
187,812 - -0.2
188,117 + GFF3368 0.26 -0.1
188,117 + GFF3368 0.26 -0.3
188,117 + GFF3368 0.26 +0.4
188,118 - GFF3368 0.26 +1.1
188,118 - GFF3368 0.26 +0.6
188,118 - GFF3368 0.26 -0.3
188,118 - GFF3368 0.26 -0.2
188,118 - GFF3368 0.26 +0.1
188,156 + GFF3368 0.29 -1.1
188,156 + GFF3368 0.29 +0.0
188,156 + GFF3368 0.29 +0.2
188,156 + GFF3368 0.29 -0.8
188,156 + GFF3368 0.29 -0.9
188,156 + GFF3368 0.29 +1.5
188,156 + GFF3368 0.29 +0.1
188,156 + GFF3368 0.29 +1.1
188,156 + GFF3368 0.29 +1.1
188,157 - GFF3368 0.29 +0.3
188,157 - GFF3368 0.29 +0.3
188,157 - GFF3368 0.29 -0.6
188,157 - GFF3368 0.29 -0.1
188,157 - GFF3368 0.29 +2.7
188,157 - GFF3368 0.29 -0.3
188,157 - GFF3368 0.29 -0.5
188,157 - GFF3368 0.29 -1.1
188,157 - GFF3368 0.29 -0.1
188,234 + GFF3368 0.35 -0.8
188,234 + GFF3368 0.35 -0.1
188,234 + GFF3368 0.35 +2.1
188,235 - GFF3368 0.35 -0.3
188,235 - GFF3368 0.35 -0.0
188,235 - GFF3368 0.35 +0.7
188,235 - GFF3368 0.35 +0.7
188,235 - GFF3368 0.35 -0.6
188,235 - GFF3368 0.35 -0.2
188,235 - GFF3368 0.35 -0.6
188,235 - GFF3368 0.35 +0.0
188,235 - GFF3368 0.35 +0.3
188,235 - GFF3368 0.35 -0.6
188,235 - GFF3368 0.35 +0.4
188,235 - GFF3368 0.35 -0.8
188,447 + GFF3368 0.52 -0.1
188,448 - GFF3368 0.52 -0.3
188,448 - GFF3368 0.52 +0.7
188,448 - GFF3368 0.52 -0.7
188,448 - GFF3368 0.52 -0.6
188,585 + GFF3368 0.62 -0.8
188,707 - GFF3368 0.72 -0.3
188,707 - GFF3368 0.72 -0.4
188,707 - GFF3368 0.72 -0.1
188,707 - GFF3368 0.72 -0.2
188,707 - GFF3368 0.72 +1.3
188,707 - GFF3368 0.72 +0.0
188,708 + GFF3368 0.72 -0.9
188,708 + GFF3368 0.72 -0.8
188,708 + GFF3368 0.72 -0.4
188,708 + GFF3368 0.72 +0.2
188,708 + GFF3368 0.72 -0.7
188,708 + GFF3368 0.72 -1.3
188,708 + GFF3368 0.72 +0.1
188,708 + GFF3368 0.72 -0.9
188,708 + GFF3368 0.72 +0.5
188,708 + GFF3368 0.72 -0.7
188,708 + GFF3368 0.72 -0.7
188,708 + GFF3368 0.72 +0.5
188,708 + GFF3368 0.72 -0.1
188,708 + GFF3368 0.72 +0.5
188,708 + GFF3368 0.72 +0.2
188,708 + GFF3368 0.72 +0.1
188,708 + GFF3368 0.72 +1.1
188,708 + GFF3368 0.72 -0.4
188,708 + GFF3368 0.72 +0.1
188,708 + GFF3368 0.72 -1.6
188,709 - GFF3368 0.72 -0.1
188,709 - GFF3368 0.72 -0.4
188,709 - GFF3368 0.72 -0.4
188,709 - GFF3368 0.72 +0.2
188,709 - GFF3368 0.72 -0.4
188,709 - GFF3368 0.72 +0.0
188,709 - GFF3368 0.72 -0.3
188,709 - GFF3368 0.72 +0.2
188,709 - GFF3368 0.72 +0.8
188,709 - GFF3368 0.72 +0.9
188,709 - GFF3368 0.72 -0.4
188,709 - GFF3368 0.72 +0.5
188,709 - GFF3368 0.72 +0.4
188,709 - GFF3368 0.72 +0.5
188,709 - GFF3368 0.72 -0.2
188,709 - GFF3368 0.72 -0.8
188,709 - GFF3368 0.72 -0.7
188,709 - GFF3368 0.72 -0.1
188,709 - GFF3368 0.72 -0.2
188,709 - GFF3368 0.72 -0.1
188,709 - GFF3368 0.72 -1.5
188,709 - GFF3368 0.72 +0.9
188,709 - GFF3368 0.72 -1.2
188,709 - GFF3368 0.72 -1.2
188,709 - GFF3368 0.72 -0.6
188,709 - GFF3368 0.72 +0.1
188,709 - GFF3368 0.72 -0.9
188,709 - GFF3368 0.72 -1.0
188,709 - GFF3368 0.72 -0.2
188,828 + GFF3368 0.81 +0.3
188,828 + GFF3368 0.81 -0.3
188,829 - GFF3368 0.81 -0.1
188,829 - GFF3368 0.81 +0.0
188,858 + GFF3368 0.84 -0.7
188,858 + GFF3368 0.84 -0.2
188,859 - GFF3368 0.84 -0.9
189,411 + GFF3369 0.48 -0.9
189,477 + GFF3369 0.64 -0.6
189,622 + +1.0
189,623 - -0.3
189,623 - -0.9
189,623 - -0.5
189,623 - -0.5
189,646 + +2.7
189,647 - -0.2
189,653 + -0.8
189,654 - -0.4
189,654 - +0.2
189,654 - -0.5
189,654 - -0.8
189,654 - -0.3
189,654 - -0.0
189,657 + +1.0
189,657 + -0.2
189,658 - -0.0
189,658 - -0.6
189,658 - -0.6
189,658 - +0.2
189,658 - -0.3
189,664 - -0.6
189,664 - +0.0
189,787 - -0.4

Or see this region's nucleotide sequence