Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3112 and GFF3113 are separated by 34 nucleotides GFF3113 and GFF3114 overlap by 8 nucleotides GFF3114 and GFF3115 are separated by 237 nucleotides
GFF3112 - Methionine ABC transporter substrate-binding protein, at 539,047 to 539,883
GFF3112
GFF3113 - Methionine ABC transporter permease protein, at 539,918 to 540,580
GFF3113
GFF3114 - Methionine ABC transporter ATP-binding protein, at 540,573 to 541,460
GFF3114
GFF3115 - Methionine ABC transporter substrate-binding protein, at 541,698 to 542,513
GFF3115
Position (kb) 540
541
542 Strain fitness (log2 ratio) -1
0
1
2 at 539.591 kb on + strand, within GFF3112 at 539.592 kb on - strand, within GFF3112 at 539.657 kb on + strand, within GFF3112 at 539.658 kb on - strand, within GFF3112 at 539.658 kb on - strand, within GFF3112 at 539.658 kb on - strand, within GFF3112 at 539.687 kb on + strand, within GFF3112 at 539.687 kb on + strand, within GFF3112 at 539.687 kb on + strand, within GFF3112 at 539.687 kb on + strand, within GFF3112 at 539.688 kb on - strand, within GFF3112 at 539.688 kb on - strand, within GFF3112 at 539.688 kb on - strand, within GFF3112 at 539.898 kb on - strand at 539.898 kb on - strand at 539.898 kb on - strand at 539.898 kb on - strand at 539.901 kb on + strand at 539.901 kb on + strand at 539.901 kb on + strand at 539.901 kb on + strand at 539.902 kb on - strand at 539.902 kb on - strand at 539.902 kb on - strand at 539.902 kb on - strand at 539.972 kb on + strand at 539.972 kb on + strand at 539.973 kb on - strand at 539.973 kb on - strand at 540.027 kb on + strand, within GFF3113 at 540.027 kb on + strand, within GFF3113 at 540.028 kb on - strand, within GFF3113 at 540.028 kb on - strand, within GFF3113 at 540.030 kb on + strand, within GFF3113 at 540.031 kb on - strand, within GFF3113 at 540.093 kb on + strand, within GFF3113 at 540.093 kb on + strand, within GFF3113 at 540.094 kb on - strand, within GFF3113 at 540.264 kb on + strand, within GFF3113 at 540.264 kb on + strand, within GFF3113 at 540.265 kb on - strand, within GFF3113 at 540.265 kb on - strand, within GFF3113 at 540.265 kb on - strand, within GFF3113 at 540.580 kb on + strand at 540.580 kb on + strand at 540.581 kb on - strand at 540.581 kb on - strand at 541.000 kb on + strand, within GFF3114 at 541.000 kb on + strand, within GFF3114 at 541.521 kb on + strand at 541.522 kb on - strand at 541.608 kb on - strand at 541.623 kb on - strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.902 kb on + strand, within GFF3115 at 541.902 kb on + strand, within GFF3115 at 541.902 kb on + strand, within GFF3115 at 541.903 kb on - strand, within GFF3115 at 541.903 kb on - strand, within GFF3115 at 542.046 kb on + strand, within GFF3115 at 542.046 kb on + strand, within GFF3115 at 542.046 kb on + strand, within GFF3115 at 542.046 kb on + strand, within GFF3115 at 542.047 kb on - strand, within GFF3115 at 542.047 kb on - strand, within GFF3115 at 542.047 kb on - strand, within GFF3115 at 542.047 kb on - strand, within GFF3115 at 542.376 kb on + strand, within GFF3115
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 539,591 + GFF3112 0.65 +0.2 539,592 - GFF3112 0.65 +0.9 539,657 + GFF3112 0.73 +1.9 539,658 - GFF3112 0.73 -0.4 539,658 - GFF3112 0.73 -0.7 539,658 - GFF3112 0.73 +0.0 539,687 + GFF3112 0.76 -1.0 539,687 + GFF3112 0.76 -0.3 539,687 + GFF3112 0.76 +0.9 539,687 + GFF3112 0.76 -0.1 539,688 - GFF3112 0.77 -0.5 539,688 - GFF3112 0.77 -1.2 539,688 - GFF3112 0.77 -0.6 539,898 - +0.3 539,898 - -1.3 539,898 - -0.4 539,898 - -1.6 539,901 + -0.7 539,901 + +0.1 539,901 + -0.5 539,901 + -0.2 539,902 - +0.8 539,902 - -1.2 539,902 - -1.0 539,902 - -0.7 539,972 + +0.3 539,972 + +0.4 539,973 - -0.4 539,973 - -0.1 540,027 + GFF3113 0.16 -0.9 540,027 + GFF3113 0.16 -0.8 540,028 - GFF3113 0.17 -0.5 540,028 - GFF3113 0.17 -0.6 540,030 + GFF3113 0.17 +0.3 540,031 - GFF3113 0.17 -0.2 540,093 + GFF3113 0.26 +0.5 540,093 + GFF3113 0.26 -0.3 540,094 - GFF3113 0.27 -0.2 540,264 + GFF3113 0.52 +0.1 540,264 + GFF3113 0.52 +1.9 540,265 - GFF3113 0.52 -0.8 540,265 - GFF3113 0.52 +0.3 540,265 - GFF3113 0.52 -0.6 540,580 + +0.1 540,580 + -0.3 540,581 - -0.5 540,581 - -0.3 541,000 + GFF3114 0.48 -0.7 541,000 + GFF3114 0.48 -0.6 541,521 + +1.9 541,522 - +2.2 541,608 - +0.4 541,623 - -0.5 541,628 + -0.1 541,628 + +0.0 541,628 + -1.6 541,628 + -0.2 541,628 + -1.0 541,628 + -0.0 541,628 + -0.7 541,629 - -0.8 541,629 - -0.9 541,629 - -0.7 541,629 - +0.1 541,629 - +0.9 541,629 - -0.9 541,902 + GFF3115 0.25 -0.6 541,902 + GFF3115 0.25 +0.4 541,902 + GFF3115 0.25 +0.1 541,903 - GFF3115 0.25 -1.3 541,903 - GFF3115 0.25 -1.3 542,046 + GFF3115 0.43 +0.8 542,046 + GFF3115 0.43 +0.2 542,046 + GFF3115 0.43 -0.3 542,046 + GFF3115 0.43 +0.0 542,047 - GFF3115 0.43 -0.4 542,047 - GFF3115 0.43 +1.1 542,047 - GFF3115 0.43 -1.2 542,047 - GFF3115 0.43 +0.5 542,376 + GFF3115 0.83 +0.6
Or see this region's nucleotide sequence