Strain Fitness in Variovorax sp. SCN45 around GFF3110

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3108 and GFF3109 are separated by 115 nucleotidesGFF3109 and GFF3110 overlap by 4 nucleotidesGFF3110 and GFF3111 are separated by 16 nucleotidesGFF3111 and GFF3112 are separated by 34 nucleotides GFF3108 - Transcriptional regulator, LysR family, at 535,346 to 536,350 GFF3108 GFF3109 - Methionine ABC transporter substrate-binding protein, at 536,466 to 537,299 GFF3109 GFF3110 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 537,296 to 538,645 GFF3110 GFF3111 - hypothetical protein, at 538,662 to 539,012 GFF3111 GFF3112 - Methionine ABC transporter substrate-binding protein, at 539,047 to 539,883 GFF3112 Position (kb) 537 538 539Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 536.366 kb on + strandat 536.367 kb on - strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.427 kb on - strandat 536.427 kb on - strandat 536.427 kb on - strandat 536.585 kb on + strand, within GFF3109at 536.586 kb on - strand, within GFF3109at 536.586 kb on - strand, within GFF3109at 536.599 kb on - strand, within GFF3109at 536.649 kb on + strand, within GFF3109at 536.661 kb on + strand, within GFF3109at 536.661 kb on + strand, within GFF3109at 536.661 kb on + strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.745 kb on + strand, within GFF3109at 536.745 kb on + strand, within GFF3109at 536.745 kb on + strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.823 kb on + strand, within GFF3109at 536.824 kb on - strand, within GFF3109at 536.824 kb on - strand, within GFF3109at 537.147 kb on + strand, within GFF3109at 537.147 kb on + strand, within GFF3109at 537.148 kb on - strand, within GFF3109at 537.285 kb on + strandat 537.285 kb on + strandat 537.285 kb on + strandat 537.286 kb on - strandat 537.286 kb on - strandat 537.422 kb on + strandat 537.422 kb on + strandat 537.422 kb on + strandat 537.422 kb on + strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.423 kb on - strandat 537.605 kb on + strand, within GFF3110at 537.605 kb on + strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.606 kb on - strand, within GFF3110at 537.617 kb on + strand, within GFF3110at 537.617 kb on + strand, within GFF3110at 537.617 kb on + strand, within GFF3110at 537.618 kb on - strand, within GFF3110at 537.618 kb on - strand, within GFF3110at 537.618 kb on - strand, within GFF3110at 537.753 kb on - strand, within GFF3110at 537.874 kb on - strand, within GFF3110at 538.046 kb on + strand, within GFF3110at 538.046 kb on + strand, within GFF3110at 538.046 kb on + strand, within GFF3110at 538.047 kb on - strand, within GFF3110at 538.196 kb on + strand, within GFF3110at 538.196 kb on + strand, within GFF3110at 538.197 kb on - strand, within GFF3110at 538.197 kb on - strand, within GFF3110at 538.349 kb on + strand, within GFF3110at 538.350 kb on - strand, within GFF3110at 538.568 kb on + strandat 538.568 kb on + strandat 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.850 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.897 kb on + strand, within GFF3111at 538.995 kb on + strandat 539.048 kb on + strandat 539.048 kb on + strandat 539.048 kb on + strandat 539.049 kb on - strandat 539.049 kb on - strandat 539.072 kb on + strandat 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.273 kb on + strand, within GFF3112at 539.273 kb on + strand, within GFF3112at 539.514 kb on - strand, within GFF3112at 539.514 kb on - strand, within GFF3112at 539.591 kb on + strand, within GFF3112at 539.592 kb on - strand, within GFF3112

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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536,366 + -0.5
536,367 - -0.1
536,426 + -1.8
536,426 + +0.9
536,426 + -0.9
536,426 + +0.2
536,426 + -1.4
536,427 - -1.0
536,427 - +1.9
536,427 - -1.0
536,585 + GFF3109 0.14 -0.3
536,586 - GFF3109 0.14 -0.6
536,586 - GFF3109 0.14 -1.3
536,599 - GFF3109 0.16 -0.2
536,649 + GFF3109 0.22 -0.9
536,661 + GFF3109 0.23 +1.6
536,661 + GFF3109 0.23 +0.3
536,661 + GFF3109 0.23 -1.7
536,662 - GFF3109 0.24 -1.8
536,662 - GFF3109 0.24 -0.0
536,662 - GFF3109 0.24 +0.3
536,662 - GFF3109 0.24 -0.9
536,662 - GFF3109 0.24 -0.1
536,662 - GFF3109 0.24 -0.3
536,662 - GFF3109 0.24 +0.3
536,745 + GFF3109 0.33 -0.8
536,745 + GFF3109 0.33 -0.9
536,745 + GFF3109 0.33 -0.6
536,746 - GFF3109 0.34 -0.6
536,746 - GFF3109 0.34 -0.6
536,746 - GFF3109 0.34 +0.7
536,746 - GFF3109 0.34 +0.2
536,823 + GFF3109 0.43 -0.6
536,824 - GFF3109 0.43 -1.1
536,824 - GFF3109 0.43 -1.3
537,147 + GFF3109 0.82 -1.0
537,147 + GFF3109 0.82 -0.9
537,148 - GFF3109 0.82 -1.4
537,285 + +0.1
537,285 + -0.4
537,285 + -0.3
537,286 - +0.0
537,286 - +1.3
537,422 + +0.9
537,422 + -0.9
537,422 + +1.3
537,422 + +0.3
537,423 - -0.2
537,423 - -0.3
537,423 - -0.2
537,423 - -0.4
537,423 - +0.3
537,423 - -1.5
537,605 + GFF3110 0.23 -1.7
537,605 + GFF3110 0.23 -0.8
537,606 - GFF3110 0.23 -0.3
537,606 - GFF3110 0.23 -0.2
537,606 - GFF3110 0.23 -0.5
537,606 - GFF3110 0.23 +2.9
537,606 - GFF3110 0.23 +1.3
537,606 - GFF3110 0.23 +0.2
537,606 - GFF3110 0.23 +0.2
537,606 - GFF3110 0.23 -0.6
537,617 + GFF3110 0.24 +0.1
537,617 + GFF3110 0.24 -0.8
537,617 + GFF3110 0.24 -1.0
537,618 - GFF3110 0.24 -0.3
537,618 - GFF3110 0.24 +0.4
537,618 - GFF3110 0.24 -1.1
537,753 - GFF3110 0.34 -0.1
537,874 - GFF3110 0.43 -1.4
538,046 + GFF3110 0.56 -0.8
538,046 + GFF3110 0.56 +1.2
538,046 + GFF3110 0.56 +0.9
538,047 - GFF3110 0.56 -1.2
538,196 + GFF3110 0.67 -0.9
538,196 + GFF3110 0.67 -0.1
538,197 - GFF3110 0.67 -0.5
538,197 - GFF3110 0.67 -0.7
538,349 + GFF3110 0.78 +0.3
538,350 - GFF3110 0.78 -0.6
538,568 + -0.4
538,568 + -0.5
538,838 - GFF3111 0.50 +0.1
538,838 - GFF3111 0.50 +0.4
538,838 - GFF3111 0.50 -0.5
538,838 - GFF3111 0.50 -0.6
538,838 - GFF3111 0.50 +1.5
538,838 - GFF3111 0.50 -0.7
538,850 + GFF3111 0.54 -1.3
538,858 + GFF3111 0.56 -0.4
538,858 + GFF3111 0.56 +0.1
538,858 + GFF3111 0.56 -1.0
538,858 + GFF3111 0.56 -1.6
538,858 + GFF3111 0.56 -0.7
538,858 + GFF3111 0.56 -0.4
538,858 + GFF3111 0.56 -0.1
538,858 + GFF3111 0.56 +0.3
538,858 + GFF3111 0.56 -1.4
538,858 + GFF3111 0.56 +0.3
538,859 - GFF3111 0.56 +0.3
538,859 - GFF3111 0.56 +0.1
538,859 - GFF3111 0.56 -1.1
538,859 - GFF3111 0.56 +0.6
538,859 - GFF3111 0.56 -1.4
538,859 - GFF3111 0.56 -0.3
538,897 + GFF3111 0.67 -0.9
538,995 + +0.4
539,048 + -1.0
539,048 + -0.7
539,048 + -2.2
539,049 - -0.8
539,049 - +1.9
539,072 + +1.2
539,189 + GFF3112 0.17 +0.3
539,189 + GFF3112 0.17 -1.6
539,189 + GFF3112 0.17 +0.1
539,189 + GFF3112 0.17 +0.3
539,189 + GFF3112 0.17 -0.4
539,190 - GFF3112 0.17 -0.1
539,190 - GFF3112 0.17 +0.9
539,190 - GFF3112 0.17 +2.9
539,190 - GFF3112 0.17 -0.6
539,190 - GFF3112 0.17 -0.3
539,190 - GFF3112 0.17 +1.1
539,192 + GFF3112 0.17 -0.7
539,192 + GFF3112 0.17 -0.9
539,192 + GFF3112 0.17 -0.8
539,193 - GFF3112 0.17 -1.1
539,193 - GFF3112 0.17 +1.5
539,193 - GFF3112 0.17 -0.5
539,193 - GFF3112 0.17 +3.9
539,193 - GFF3112 0.17 -0.5
539,273 + GFF3112 0.27 +0.1
539,273 + GFF3112 0.27 -1.3
539,514 - GFF3112 0.56 -0.4
539,514 - GFF3112 0.56 -0.1
539,591 + GFF3112 0.65 +0.2
539,592 - GFF3112 0.65 +0.9

Or see this region's nucleotide sequence