Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3069 and GFF3070 are separated by 18 nucleotides GFF3070 and GFF3071 overlap by 4 nucleotides GFF3071 and GFF3072 overlap by 16 nucleotides
GFF3069 - Glutamine synthetase type I (EC 6.3.1.2), at 502,704 to 504,119
GFF3069
GFF3070 - no description, at 504,138 to 504,269
GFF3070
GFF3071 - ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13), at 504,266 to 505,078
GFF3071
GFF3072 - Putative transmembrane protein, at 505,063 to 505,953
GFF3072
Position (kb) 504
505 Strain fitness (log2 ratio) -2
-1
0
1
2 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.319 kb on + strand at 504.319 kb on + strand at 504.330 kb on + strand at 504.330 kb on + strand at 504.330 kb on + strand at 504.331 kb on - strand at 504.331 kb on - strand at 504.331 kb on - strand at 504.388 kb on - strand, within GFF3071 at 504.444 kb on + strand, within GFF3071 at 504.540 kb on + strand, within GFF3071 at 504.540 kb on + strand, within GFF3071 at 504.541 kb on - strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.720 kb on + strand, within GFF3071 at 504.720 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 505.196 kb on + strand, within GFF3072 at 505.196 kb on + strand, within GFF3072 at 505.196 kb on + strand, within GFF3072 at 505.196 kb on + strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 504,153 - GFF3070 0.11 +0.6 504,153 - GFF3070 0.11 -1.1 504,153 - GFF3070 0.11 -0.2 504,153 - GFF3070 0.11 +0.1 504,153 - GFF3070 0.11 -0.0 504,153 - GFF3070 0.11 +0.7 504,153 - GFF3070 0.11 +0.2 504,319 + +0.1 504,319 + +0.1 504,330 + -1.0 504,330 + +0.1 504,330 + -0.6 504,331 - +0.3 504,331 - -0.5 504,331 - -1.0 504,388 - GFF3071 0.15 -0.4 504,444 + GFF3071 0.22 +0.1 504,540 + GFF3071 0.34 +0.9 504,540 + GFF3071 0.34 -0.8 504,541 - GFF3071 0.34 -1.9 504,639 + GFF3071 0.46 +0.1 504,639 + GFF3071 0.46 -0.1 504,639 + GFF3071 0.46 -0.8 504,639 + GFF3071 0.46 -0.7 504,639 + GFF3071 0.46 +1.9 504,640 - GFF3071 0.46 -2.4 504,640 - GFF3071 0.46 +0.3 504,640 - GFF3071 0.46 -0.2 504,640 - GFF3071 0.46 +0.3 504,720 + GFF3071 0.56 -1.1 504,720 + GFF3071 0.56 +0.3 504,939 + GFF3071 0.83 -0.8 504,939 + GFF3071 0.83 +1.4 504,939 + GFF3071 0.83 +0.4 504,939 + GFF3071 0.83 -0.3 504,940 - GFF3071 0.83 +0.5 504,940 - GFF3071 0.83 +0.0 504,940 - GFF3071 0.83 +0.5 504,940 - GFF3071 0.83 -0.3 505,196 + GFF3072 0.15 +0.7 505,196 + GFF3072 0.15 -0.5 505,196 + GFF3072 0.15 -0.1 505,196 + GFF3072 0.15 -0.8 505,197 - GFF3072 0.15 -0.6 505,197 - GFF3072 0.15 -0.4 505,197 - GFF3072 0.15 +0.9 505,197 - GFF3072 0.15 +0.2 505,197 - GFF3072 0.15 +0.7 505,197 - GFF3072 0.15 -0.8 505,238 + GFF3072 0.20 -1.1 505,238 + GFF3072 0.20 -0.7 505,238 + GFF3072 0.20 -1.1 505,238 + GFF3072 0.20 -0.7 505,238 + GFF3072 0.20 -0.2 505,238 + GFF3072 0.20 +0.2 505,238 + GFF3072 0.20 +0.9 505,238 + GFF3072 0.20 -0.7 505,238 + GFF3072 0.20 -0.1 505,239 - GFF3072 0.20 -0.2 505,239 - GFF3072 0.20 +0.2 505,239 - GFF3072 0.20 -0.2 505,239 - GFF3072 0.20 +0.0 505,239 - GFF3072 0.20 +0.9 505,239 - GFF3072 0.20 -1.5 505,239 - GFF3072 0.20 -0.4 505,239 - GFF3072 0.20 -0.3 505,239 - GFF3072 0.20 +0.2 505,239 - GFF3072 0.20 +0.3 505,239 - GFF3072 0.20 -0.1
Or see this region's nucleotide sequence